Wall clock time and date at job start Mon Mar 30 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 H 1.09007 * 109.46710 * 305.62602 * 3 2 1 5 5 C 1.50694 * 109.47167 * 65.62428 * 3 2 1 6 6 H 1.07998 * 119.99864 * 28.17424 * 5 3 2 7 7 C 1.37878 * 119.99858 * 208.16533 * 5 3 2 8 8 N 1.31514 * 120.00168 * 6.21599 * 7 5 3 9 9 Si 1.86799 * 119.99784 * 186.21691 * 7 5 3 10 10 H 1.48494 * 109.47365 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47297 * 120.00435 * 9 7 5 12 12 H 1.48501 * 109.47307 * 240.00044 * 9 7 5 13 13 C 1.50704 * 109.46974 * 185.63083 * 3 2 1 14 14 C 1.38266 * 119.97120 * 299.99030 * 13 3 2 15 15 C 1.38176 * 120.02231 * 180.02562 * 14 13 3 16 16 C 1.38474 * 119.97680 * 359.97438 * 15 14 13 17 17 F 1.35104 * 120.02929 * 179.72566 * 16 15 14 18 18 C 1.38438 * 119.95088 * 359.97438 * 16 15 14 19 19 C 1.50698 * 120.01693 * 179.97438 * 18 16 15 20 20 C 1.38220 * 119.97196 * 0.02562 * 18 16 15 21 21 H 1.09001 * 109.46988 * 54.08513 * 1 2 3 22 22 H 1.09000 * 109.47623 * 174.08484 * 1 2 3 23 23 H 1.08997 * 109.47571 * 294.09064 * 1 2 3 24 24 H 1.09004 * 109.47186 * 239.99367 * 2 1 3 25 25 H 1.08999 * 109.46951 * 120.00029 * 2 1 3 26 26 H 0.97000 * 119.99920 * 179.97438 * 8 7 5 27 27 H 1.07994 * 119.98729 * 0.03085 * 14 13 3 28 28 H 1.08004 * 120.00916 * 179.97438 * 15 14 13 29 29 H 1.08996 * 109.47642 * 89.99787 * 19 18 16 30 30 H 1.08999 * 109.46847 * 210.00097 * 19 18 16 31 31 H 1.09003 * 109.47065 * 329.99440 * 19 18 16 32 32 H 1.08000 * 119.98864 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9845 -0.8354 5 6 1.6546 2.1115 1.2941 6 1 1.5297 1.5221 2.1904 7 6 1.4618 3.4762 1.3339 8 7 1.4934 4.1775 0.2218 9 14 1.1554 4.3289 2.9674 10 1 1.1673 3.3238 4.0604 11 1 2.2207 5.3351 3.2080 12 1 -0.1659 5.0058 2.9324 13 6 3.5406 1.4447 -0.1394 14 6 4.3234 0.8133 0.8095 15 6 5.6993 0.8151 0.6830 16 6 6.2942 1.4491 -0.3949 17 9 7.6397 1.4562 -0.5167 18 6 5.5094 2.0799 -1.3449 19 6 6.1553 2.7707 -2.5182 20 6 4.1332 2.0768 -1.2163 21 1 -0.3633 0.6028 -0.8323 22 1 -0.3634 -1.0222 -0.1059 23 1 -0.3634 0.4194 0.9381 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3573 5.1375 0.2497 27 1 3.8592 0.3186 1.6498 28 1 6.3106 0.3223 1.4246 29 1 6.2633 2.0645 -3.3413 30 1 5.5318 3.6064 -2.8360 31 1 7.1379 3.1412 -2.2259 32 1 3.5207 2.5693 -1.9571 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351445.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:41 Heat of formation + Delta-G solvation = -62.975102 kcal Electronic energy + Delta-G solvation = -15000.512434 eV Core-core repulsion = 12452.800985 eV Total energy + Delta-G solvation = -2547.711449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.73701 -40.13381 -36.64204 -33.88396 -33.37722 -31.41661 -28.41567 -27.54450 -25.54624 -23.25813 -22.60912 -20.81338 -18.52009 -18.30879 -17.06358 -16.56690 -16.50587 -15.95812 -15.14861 -14.89560 -14.46651 -14.24872 -14.10339 -13.96412 -13.58778 -13.10392 -13.07127 -12.92981 -12.82390 -12.45522 -12.24103 -11.92278 -11.78517 -11.54031 -11.08204 -10.84006 -10.51372 -9.63694 -9.10386 -8.09867 -6.16042 0.47287 0.50961 1.39190 1.43523 1.51981 2.43763 2.88727 3.24043 3.47030 3.93128 3.98275 4.26491 4.50107 4.53185 4.60283 4.62513 4.75613 4.79090 4.87813 4.99983 5.17902 5.20239 5.33311 5.37697 5.43409 5.48916 5.61736 5.64221 5.76177 5.83959 6.08638 6.25147 6.41814 6.96777 7.48804 8.97848 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.009669 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.628418 B = 2895.071385 C = 3291.391631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C 0.063 3.937 4 H 0.030 0.970 5 C -0.503 4.503 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.939 3.061 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.283 1.283 13 C -0.044 4.044 14 C -0.103 4.103 15 C -0.150 4.150 16 C 0.047 3.953 17 F -0.149 7.149 18 C -0.127 4.127 19 C -0.106 4.106 20 C -0.110 4.110 21 H 0.035 0.965 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.259 0.741 27 H 0.132 0.868 28 H 0.149 0.851 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -5.694 -1.886 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C 0.044 3.956 4 H 0.048 0.952 5 C -0.541 4.541 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.766 3.234 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.209 1.209 13 C -0.045 4.045 14 C -0.121 4.121 15 C -0.169 4.169 16 C 0.028 3.972 17 F -0.128 7.128 18 C -0.128 4.128 19 C -0.162 4.162 20 C -0.129 4.129 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.167 0.833 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.552 -5.514 -1.954 8.065 hybrid contribution -0.054 0.992 0.796 1.273 sum 5.498 -4.522 -1.158 7.212 Atomic orbital electron populations 1.21543 0.95801 1.00216 1.01113 1.21485 0.96186 0.96438 0.99914 1.18018 0.87044 0.93243 0.97277 0.95162 1.21274 1.45262 0.92122 0.95402 0.92503 1.25627 0.95207 0.98659 0.98555 1.70038 1.50950 1.06924 1.27573 0.85788 0.77290 0.78794 0.81549 1.18742 1.21513 1.20909 1.20835 0.98930 0.92663 0.92094 1.20902 0.92181 0.99953 0.99063 1.21245 0.95686 1.01949 0.98008 1.17505 0.76487 1.04792 0.98438 1.91393 1.29789 1.95382 1.96198 1.20127 0.93761 1.00715 0.98163 1.20699 1.00441 1.00211 0.94868 1.20888 0.93001 1.00122 0.98859 0.94562 0.92005 0.93588 0.93533 0.92709 0.93233 0.85059 0.83313 0.89631 0.90978 0.91152 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.64 71.98 0.69 -4.02 16 2 C -0.10 -3.99 5.12 30.59 0.16 -3.83 16 3 C 0.06 2.94 2.01 -12.29 -0.02 2.91 16 4 H 0.03 1.60 7.16 -2.38 -0.02 1.58 16 5 C -0.50 -25.72 7.05 25.60 0.18 -25.54 16 6 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 7 C 0.02 1.01 5.45 84.65 0.46 1.47 16 8 N -0.92 -51.69 12.87 21.45 0.28 -51.41 16 9 Si 0.94 42.78 29.54 68.60 2.03 44.81 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C -0.04 -1.95 4.77 -19.86 -0.09 -2.04 16 14 C -0.10 -4.03 8.87 22.26 0.20 -3.83 16 15 C -0.15 -5.29 10.03 22.31 0.22 -5.07 16 16 C 0.05 1.70 7.24 22.37 0.16 1.86 16 17 F -0.15 -5.06 16.48 44.97 0.74 -4.32 16 18 C -0.13 -4.70 5.89 -19.82 -0.12 -4.82 16 19 C -0.11 -3.11 9.84 71.24 0.70 -2.41 16 20 C -0.11 -4.64 9.32 22.26 0.21 -4.44 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.78 7.59 -2.39 -0.02 1.76 16 24 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.05 2.02 7.59 -2.39 -0.02 2.00 16 26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.13 4.84 7.64 -2.91 -0.02 4.82 16 28 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 31 H 0.07 1.93 7.64 -2.39 -0.02 1.92 16 32 H 0.11 4.92 7.94 -2.91 -0.02 4.90 16 Total: -1.00 -56.62 275.83 6.88 -49.74 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.09 Total: 10.94 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 2.75 Total: -49.75 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.28 Total: -51.41 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.74 Total: -4.32 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -56.62 6.88 -49.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351445.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.240 kcal (2) G-P(sol) polarization free energy of solvation -56.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds