Wall clock time and date at job start Mon Mar 30 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 H 1.08994 * 109.47316 * 305.00193 * 3 2 1 5 5 C 1.50707 * 109.46993 * 184.99805 * 3 2 1 6 6 H 1.07994 * 120.00117 * 239.99910 * 5 3 2 7 7 C 1.37878 * 119.99471 * 60.00362 * 5 3 2 8 8 N 1.31514 * 120.00655 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99523 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47159 * 60.00125 * 9 7 5 11 11 H 1.48499 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47464 * 300.00246 * 9 7 5 13 13 C 1.50702 * 109.46952 * 65.00345 * 3 2 1 14 14 C 1.38263 * 119.97595 * 59.97515 * 13 3 2 15 15 C 1.38176 * 120.02823 * 180.02562 * 14 13 3 16 16 C 1.38485 * 119.97176 * 359.97438 * 15 14 13 17 17 F 1.35093 * 120.02684 * 180.29646 * 16 15 14 18 18 C 1.38445 * 119.94716 * 0.02601 * 16 15 14 19 19 C 1.50694 * 120.00973 * 179.97438 * 18 16 15 20 20 C 1.38218 * 119.97632 * 359.97438 * 18 16 15 21 21 H 1.08994 * 109.47218 * 59.99953 * 1 2 3 22 22 H 1.09010 * 109.46609 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47068 * 299.99369 * 1 2 3 24 24 H 1.09005 * 109.47165 * 240.00416 * 2 1 3 25 25 H 1.09004 * 109.47215 * 119.99986 * 2 1 3 26 26 H 0.96995 * 120.00117 * 179.97438 * 8 7 5 27 27 H 1.08006 * 119.98991 * 0.02562 * 14 13 3 28 28 H 1.08000 * 120.01900 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.47584 * 89.99775 * 19 18 16 30 30 H 1.09004 * 109.47177 * 209.99980 * 19 18 16 31 31 H 1.09004 * 109.47536 * 329.99440 * 19 18 16 32 32 H 1.07992 * 119.98884 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3978 0.2180 -2.6509 12 1 6.4995 2.2816 -1.3820 13 6 1.6413 2.1162 1.2878 14 6 2.0767 1.6072 2.4973 15 6 1.7114 2.2237 3.6787 16 6 0.9092 3.3522 3.6509 17 9 0.5563 3.9594 4.8050 18 6 0.4738 3.8610 2.4392 19 6 -0.3996 5.0885 2.4073 20 6 0.8405 3.2425 1.2587 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 3.8293 -0.0610 -2.9499 27 1 2.7027 0.7273 2.5188 28 1 2.0520 1.8262 4.6234 29 1 0.2267 5.9787 2.3484 30 1 -1.0540 5.0464 1.5365 31 1 -1.0035 5.1285 3.3139 32 1 0.5014 3.6394 0.3134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:43 Heat of formation + Delta-G solvation = -48.261365 kcal Electronic energy + Delta-G solvation = -14963.911708 eV Core-core repulsion = 12416.838295 eV Total energy + Delta-G solvation = -2547.073414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.41972 -38.80141 -34.99537 -32.28952 -31.63444 -29.73991 -27.11531 -26.21621 -23.33355 -21.93155 -21.36409 -18.93564 -17.00823 -16.47840 -15.66918 -15.21394 -15.02995 -14.19404 -13.60782 -13.21289 -12.98951 -12.93117 -12.68794 -12.56594 -12.22189 -11.69564 -11.41103 -11.29761 -10.94790 -10.83640 -10.60807 -10.46469 -9.97972 -9.71992 -9.40714 -9.05262 -8.39622 -8.30804 -7.67351 -6.05508 -4.13005 1.81913 1.86140 3.28761 3.33636 3.36672 4.23750 4.42180 4.80328 5.16478 5.22243 5.25605 5.55578 5.79614 5.91383 5.92431 6.07047 6.09543 6.23384 6.27864 6.49512 6.51770 6.71285 6.76641 6.92702 6.97652 7.06150 7.24255 7.35860 7.57812 7.70133 7.91838 8.04912 8.34406 8.89479 9.51739 10.99314 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032476 B = 0.008102 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.976085 B = 3454.913831 C = 3753.194086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.036 0.964 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.030 4.030 14 C -0.091 4.091 15 C -0.154 4.154 16 C 0.059 3.941 17 F -0.153 7.153 18 C -0.124 4.124 19 C -0.108 4.108 20 C -0.106 4.106 21 H 0.044 0.956 22 H 0.033 0.967 23 H 0.036 0.964 24 H 0.097 0.903 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.131 0.869 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 3.563 6.755 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.060 3.940 4 H 0.054 0.946 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.030 4.030 14 C -0.109 4.109 15 C -0.173 4.173 16 C 0.040 3.960 17 F -0.132 7.132 18 C -0.125 4.125 19 C -0.165 4.165 20 C -0.124 4.124 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.115 0.885 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.239 3.495 6.616 9.134 hybrid contribution 1.015 0.073 0.114 1.025 sum -4.223 3.568 6.730 8.710 Atomic orbital electron populations 1.21853 0.99260 0.99267 1.00114 1.21621 0.91635 0.99292 1.02607 1.17937 0.95900 0.92023 0.88183 0.94552 1.21085 0.90459 1.37814 1.05512 0.92465 1.24948 0.98100 0.95134 0.95632 1.69856 1.34969 1.38351 1.09457 0.86649 0.85675 0.78316 0.77344 1.20223 1.21259 1.20260 1.20721 0.91645 0.93247 0.97433 1.20956 0.99019 1.00077 0.90819 1.21059 1.00426 0.96140 0.99634 1.17405 1.02338 0.95410 0.80861 1.91389 1.90938 1.82915 1.47950 1.19813 1.01546 0.98967 0.92182 1.20646 0.98363 0.94969 1.02479 1.20914 0.98897 0.96137 0.96467 0.93718 0.94775 0.94464 0.88484 0.94666 0.92805 0.85124 0.85903 0.91441 0.91383 0.91916 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.73 37.16 0.36 -2.50 16 2 C -0.11 -2.57 5.14 -26.73 -0.14 -2.70 16 3 C 0.08 1.84 1.95 -92.92 -0.18 1.66 16 4 H 0.04 0.93 7.87 -51.93 -0.41 0.52 16 5 C -0.51 -13.37 8.24 -34.44 -0.28 -13.65 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C -0.03 -0.63 3.72 -104.62 -0.39 -1.02 16 14 C -0.09 -1.75 8.65 -39.59 -0.34 -2.09 16 15 C -0.15 -2.68 10.03 -39.51 -0.40 -3.08 16 16 C 0.06 1.03 7.24 -39.41 -0.29 0.75 16 17 F -0.15 -2.58 16.48 2.25 0.04 -2.55 16 18 C -0.12 -2.13 5.89 -104.56 -0.62 -2.74 16 19 C -0.11 -1.47 9.83 36.00 0.35 -1.12 16 20 C -0.11 -1.98 9.32 -39.59 -0.37 -2.35 16 21 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 23 H 0.04 0.69 7.38 -51.93 -0.38 0.30 16 24 H 0.10 2.46 5.95 -51.93 -0.31 2.15 16 25 H 0.03 0.77 7.22 -51.93 -0.38 0.40 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.13 2.50 7.54 -52.48 -0.40 2.11 16 28 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.06 0.80 7.64 -51.93 -0.40 0.41 16 32 H 0.12 2.17 7.94 -52.49 -0.42 1.76 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -26.77 271.70 -6.97 -33.75 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.33 Total: -0.05 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -2.38 Total: -27.26 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.63 Total: -23.68 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.77 -6.97 -33.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.515 kcal (2) G-P(sol) polarization free energy of solvation -26.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds