Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 H 1.08994 * 109.47316 * 305.00193 * 3 2 1 5 5 C 1.50707 * 109.46993 * 184.99805 * 3 2 1 6 6 H 1.07994 * 120.00117 * 239.99910 * 5 3 2 7 7 C 1.37878 * 119.99471 * 60.00362 * 5 3 2 8 8 N 1.31514 * 120.00655 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99523 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47159 * 60.00125 * 9 7 5 11 11 H 1.48499 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47464 * 300.00246 * 9 7 5 13 13 C 1.50702 * 109.46952 * 65.00345 * 3 2 1 14 14 C 1.38263 * 119.97595 * 59.97515 * 13 3 2 15 15 C 1.38176 * 120.02823 * 180.02562 * 14 13 3 16 16 C 1.38485 * 119.97176 * 359.97438 * 15 14 13 17 17 F 1.35093 * 120.02684 * 180.29646 * 16 15 14 18 18 C 1.38445 * 119.94716 * 0.02601 * 16 15 14 19 19 C 1.50694 * 120.00973 * 179.97438 * 18 16 15 20 20 C 1.38218 * 119.97632 * 359.97438 * 18 16 15 21 21 H 1.08994 * 109.47218 * 59.99953 * 1 2 3 22 22 H 1.09010 * 109.46609 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47068 * 299.99369 * 1 2 3 24 24 H 1.09005 * 109.47165 * 240.00416 * 2 1 3 25 25 H 1.09004 * 109.47215 * 119.99986 * 2 1 3 26 26 H 0.96995 * 120.00117 * 179.97438 * 8 7 5 27 27 H 1.08006 * 119.98991 * 0.02562 * 14 13 3 28 28 H 1.08000 * 120.01900 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.47584 * 89.99775 * 19 18 16 30 30 H 1.09004 * 109.47177 * 209.99980 * 19 18 16 31 31 H 1.09004 * 109.47536 * 329.99440 * 19 18 16 32 32 H 1.07992 * 119.98884 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3978 0.2180 -2.6509 12 1 6.4995 2.2816 -1.3820 13 6 1.6413 2.1162 1.2878 14 6 2.0767 1.6072 2.4973 15 6 1.7114 2.2237 3.6787 16 6 0.9092 3.3522 3.6509 17 9 0.5563 3.9594 4.8050 18 6 0.4738 3.8610 2.4392 19 6 -0.3996 5.0885 2.4073 20 6 0.8405 3.2425 1.2587 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 3.8293 -0.0610 -2.9499 27 1 2.7027 0.7273 2.5188 28 1 2.0520 1.8262 4.6234 29 1 0.2267 5.9787 2.3484 30 1 -1.0540 5.0464 1.5365 31 1 -1.0035 5.1285 3.3139 32 1 0.5014 3.6394 0.3134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = -60.110328 kcal Electronic energy + Delta-G solvation = -14964.425518 eV Core-core repulsion = 12416.838295 eV Total energy + Delta-G solvation = -2547.587223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.77630 -40.28766 -36.72550 -33.89997 -33.29716 -31.28480 -28.79985 -27.61417 -25.17715 -23.35123 -22.94590 -20.60086 -18.46165 -18.31478 -17.18048 -16.82842 -16.56233 -15.85549 -15.09137 -14.83140 -14.54679 -14.16144 -14.11430 -14.02743 -13.71449 -13.16277 -13.08036 -12.98825 -12.63993 -12.49614 -12.36889 -11.93276 -11.75232 -11.49847 -11.16792 -10.92129 -10.39992 -9.71219 -9.18253 -8.07214 -6.21118 0.39030 0.41643 1.43528 1.44026 1.51495 2.43586 2.81537 3.19678 3.41182 3.87867 3.94343 4.20766 4.46736 4.52588 4.55647 4.67140 4.76006 4.78049 4.85498 4.92619 5.15392 5.19711 5.29746 5.35538 5.38334 5.51228 5.51452 5.63596 5.74194 6.04644 6.10815 6.20578 6.40682 6.87408 7.46237 8.95792 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032476 B = 0.008102 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.976085 B = 3454.913831 C = 3753.194086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.081 3.919 4 H 0.008 0.992 5 C -0.524 4.524 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.275 1.275 13 C -0.050 4.050 14 C -0.102 4.102 15 C -0.147 4.147 16 C 0.055 3.945 17 F -0.146 7.146 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.114 4.114 21 H 0.040 0.960 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.261 0.739 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 4.321 8.064 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.062 3.938 4 H 0.026 0.974 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.201 1.201 13 C -0.051 4.051 14 C -0.120 4.120 15 C -0.165 4.165 16 C 0.036 3.964 17 F -0.125 7.125 18 C -0.120 4.120 19 C -0.164 4.164 20 C -0.132 4.132 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.625 4.258 7.936 10.618 hybrid contribution 1.101 -0.118 -0.241 1.133 sum -4.524 4.140 7.694 9.839 Atomic orbital electron populations 1.21715 0.96702 1.00578 1.00371 1.21468 0.93925 0.98341 1.00967 1.17764 0.94461 0.92583 0.88962 0.97396 1.21389 0.92098 1.37440 1.05297 0.93139 1.25641 1.01948 0.95015 0.95509 1.69984 1.36358 1.39028 1.09804 0.85754 0.81125 0.78250 0.77390 1.19660 1.20952 1.20065 1.20501 0.93561 0.94503 0.96489 1.20905 0.99604 1.00402 0.91114 1.21248 0.99601 0.95733 0.99938 1.17531 1.02154 0.95407 0.81261 1.91410 1.90821 1.82741 1.47535 1.20125 1.00982 0.99596 0.91298 1.20741 0.98299 0.93570 1.03806 1.20980 0.98916 0.95768 0.97540 0.94044 0.92910 0.93519 0.91556 0.94678 0.92926 0.85701 0.83329 0.90194 0.89870 0.90829 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.73 71.98 0.70 -4.51 16 2 C -0.11 -5.00 5.14 30.59 0.16 -4.85 16 3 C 0.08 3.90 1.95 -12.28 -0.02 3.88 16 4 H 0.01 0.42 7.87 -2.39 -0.02 0.40 16 5 C -0.52 -27.96 8.24 25.60 0.21 -27.75 16 6 H 0.05 2.69 7.60 -2.91 -0.02 2.67 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -51.06 11.29 21.45 0.24 -50.82 16 9 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C -0.05 -2.08 3.72 -19.86 -0.07 -2.15 16 14 C -0.10 -3.87 8.65 22.26 0.19 -3.68 16 15 C -0.15 -4.80 10.03 22.31 0.22 -4.58 16 16 C 0.06 1.81 7.24 22.38 0.16 1.97 16 17 F -0.15 -4.48 16.48 44.97 0.74 -3.74 16 18 C -0.12 -3.81 5.89 -19.82 -0.12 -3.93 16 19 C -0.11 -2.60 9.83 71.23 0.70 -1.90 16 20 C -0.11 -4.15 9.32 22.26 0.21 -3.95 16 21 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.05 1.68 7.38 -2.39 -0.02 1.66 16 24 H 0.07 3.46 5.95 -2.38 -0.01 3.45 16 25 H 0.03 1.56 7.22 -2.38 -0.02 1.54 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.13 4.79 7.54 -2.91 -0.02 4.77 16 28 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.76 8.09 -2.38 -0.02 1.74 16 31 H 0.07 1.63 7.64 -2.38 -0.02 1.61 16 32 H 0.13 4.46 7.94 -2.91 -0.02 4.44 16 Total: -1.00 -56.70 271.70 6.89 -49.81 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.10 Total: 9.98 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 2.79 Total: -50.03 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.24 Total: -50.82 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.74 Total: -3.74 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -56.70 6.89 -49.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.304 kcal (2) G-P(sol) polarization free energy of solvation -56.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds