Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47191 * 2 1 4 4 H 1.09002 * 109.46990 * 305.63030 * 3 2 1 5 5 C 1.50701 * 109.47037 * 65.62622 * 3 2 1 6 6 H 1.07999 * 120.00323 * 35.26815 * 5 3 2 7 7 C 1.37878 * 119.99965 * 215.26470 * 5 3 2 8 8 N 1.31512 * 120.00263 * 173.00390 * 7 5 3 9 9 Si 1.86798 * 119.99905 * 352.99642 * 7 5 3 10 10 H 1.48501 * 109.47064 * 91.94802 * 9 7 5 11 11 H 1.48502 * 109.47107 * 211.94264 * 9 7 5 12 12 H 1.48497 * 109.47284 * 331.94555 * 9 7 5 13 13 C 1.50697 * 109.46955 * 185.62518 * 3 2 1 14 14 O 1.21419 * 119.99927 * 270.00155 * 13 3 2 15 15 C 1.41485 * 119.99698 * 90.00271 * 13 3 2 16 16 C 1.38173 * 126.97776 * 359.97438 * 15 13 3 17 17 N 1.33159 * 107.54906 * 180.02562 * 16 15 13 18 18 C 1.30921 * 109.82637 * 0.02562 * 17 16 15 19 19 N 1.34384 * 109.48947 * 359.97438 * 18 17 16 20 20 C 1.46504 * 126.45706 * 180.02562 * 19 18 17 21 21 H 1.08994 * 109.47419 * 183.39752 * 1 2 3 22 22 H 1.08999 * 109.47423 * 303.40922 * 1 2 3 23 23 H 1.09011 * 109.46861 * 63.40015 * 1 2 3 24 24 H 1.08997 * 109.47209 * 240.00056 * 2 1 3 25 25 H 1.08997 * 109.46315 * 119.99796 * 2 1 3 26 26 H 0.96994 * 120.00733 * 180.02562 * 8 7 5 27 27 H 1.08003 * 126.22309 * 359.96455 * 16 15 13 28 28 H 1.07998 * 125.25369 * 180.27332 * 18 17 16 29 29 H 1.08998 * 109.47310 * 89.97316 * 20 19 18 30 30 H 1.08995 * 109.47255 * 209.97447 * 20 19 18 31 31 H 1.09004 * 109.47114 * 329.97373 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 1.6547 2.1115 1.2942 6 1 1.6413 1.5436 2.2127 7 6 1.3192 3.4488 1.3057 8 7 0.8514 4.0000 2.4043 9 14 1.5294 4.4778 -0.2391 10 1 0.2652 4.4650 -1.0181 11 1 1.8641 5.8745 0.1383 12 1 2.6258 3.9120 -1.0654 13 6 3.5406 1.4447 -0.1393 14 8 4.2422 1.4112 0.8511 15 6 4.1317 1.4858 -1.4241 16 6 3.4760 1.5262 -2.6397 17 7 4.4031 1.5556 -3.5951 18 6 5.5963 1.5358 -3.0567 19 7 5.4837 1.4929 -1.7183 20 6 6.5849 1.4600 -0.7526 21 1 -0.3634 -1.0258 0.0609 22 1 -0.3634 0.5658 0.8578 23 1 -0.3633 0.4602 -0.9190 24 1 1.8934 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 0.6150 4.9407 2.4124 27 1 2.4062 1.5317 -2.7879 28 1 6.5274 1.5561 -3.6037 29 1 6.8600 2.4790 -0.4804 30 1 6.2701 0.9181 0.1391 31 1 7.4441 0.9585 -1.1982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085168175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -6.586330 kcal Electronic energy + Delta-G solvation = -15428.788581 eV Core-core repulsion = 12903.442294 eV Total energy + Delta-G solvation = -2525.346287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.16176 -39.98692 -36.34503 -34.94555 -34.04268 -31.56304 -29.50436 -28.03894 -26.16333 -24.21764 -22.56580 -21.60880 -20.15903 -19.11187 -18.15388 -16.96070 -16.52940 -16.38764 -15.88138 -15.38367 -14.84876 -14.77577 -14.65623 -14.45979 -13.84182 -13.60900 -13.53219 -12.95442 -12.83498 -12.62705 -12.17491 -11.81006 -11.43502 -11.25201 -11.15814 -10.90824 -10.72820 -10.30240 -9.57994 -8.32676 -6.35065 0.06910 1.28636 1.33066 1.40978 1.72150 1.79306 2.26863 2.29141 2.97642 3.52536 3.72490 3.91036 4.14101 4.27099 4.31602 4.38343 4.47983 4.54393 4.64701 4.73102 4.96143 5.06958 5.22340 5.28721 5.43199 5.45094 5.57427 5.71495 6.14224 6.23922 6.70221 6.76377 6.96684 7.27154 8.84384 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.011458 C = 0.010631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.653971 B = 2443.218399 C = 2633.058979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.016 4.016 4 H 0.067 0.933 5 C -0.488 4.488 6 H 0.031 0.969 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.923 3.077 10 H -0.247 1.247 11 H -0.292 1.292 12 H -0.249 1.249 13 C 0.416 3.584 14 O -0.505 6.505 15 C -0.148 4.148 16 C 0.057 3.943 17 N -0.528 5.528 18 C 0.219 3.781 19 N -0.437 5.437 20 C 0.064 3.936 21 H 0.067 0.933 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.266 0.734 27 H 0.191 0.809 28 H 0.260 0.740 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.979 -5.636 -12.701 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.036 4.036 4 H 0.085 0.915 5 C -0.526 4.526 6 H 0.049 0.951 7 C -0.181 4.181 8 N -0.582 5.582 9 Si 0.746 3.254 10 H -0.171 1.171 11 H -0.219 1.219 12 H -0.173 1.173 13 C 0.297 3.703 14 O -0.384 6.384 15 C -0.262 4.262 16 C -0.098 4.098 17 N -0.246 5.246 18 C -0.063 4.063 19 N -0.117 5.117 20 C -0.077 4.077 21 H 0.086 0.914 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.208 0.792 28 H 0.276 0.724 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.290 -5.474 -12.785 16.725 hybrid contribution 0.119 0.899 1.057 1.393 sum 9.410 -4.574 -11.728 15.717 Atomic orbital electron populations 1.21613 0.94339 1.01348 1.01939 1.21268 0.97455 0.93776 1.00520 1.19622 0.88882 0.97490 0.97613 0.91484 1.20769 1.43680 0.94863 0.93253 0.95102 1.25884 0.94047 0.98957 0.99187 1.70032 1.44849 1.13247 1.30064 0.86079 0.80800 0.77958 0.80564 1.17125 1.21882 1.17253 1.21648 0.94009 0.69589 0.85038 1.90378 1.65759 1.39741 1.42512 1.21365 0.85113 1.21147 0.98559 1.23399 1.00360 0.99420 0.86643 1.70118 0.99321 1.22041 1.33129 1.26114 1.00155 1.00146 0.79846 1.45758 1.06294 1.50484 1.09153 1.22445 0.87853 1.04745 0.92616 0.91422 0.94255 0.91921 0.90998 0.94264 0.92478 0.79185 0.72411 0.90031 0.90487 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.79 71.98 0.70 -4.05 16 2 C -0.09 -3.57 5.37 30.60 0.16 -3.40 16 3 C -0.02 -0.73 1.33 -12.29 -0.02 -0.74 16 4 H 0.07 2.87 4.71 -2.39 -0.01 2.86 16 5 C -0.49 -27.89 7.25 25.60 0.19 -27.71 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 7 C 0.02 0.99 5.47 84.66 0.46 1.46 16 8 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 9 Si 0.92 43.72 26.80 68.60 1.84 45.56 16 10 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.25 -11.20 6.49 99.48 0.65 -10.55 16 13 C 0.42 18.67 5.38 26.49 0.14 18.82 16 14 O -0.50 -25.54 14.74 -3.46 -0.05 -25.59 16 15 C -0.15 -5.54 6.66 38.90 0.26 -5.28 16 16 C 0.06 1.93 11.20 84.48 0.95 2.88 16 17 N -0.53 -16.00 11.19 -198.54 -2.22 -18.22 16 18 C 0.22 5.22 12.50 180.35 2.25 7.47 16 19 N -0.44 -12.80 3.18 -543.84 -1.73 -14.53 16 20 C 0.06 1.47 10.64 127.77 1.36 2.83 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.04 1.64 7.30 -2.39 -0.02 1.62 16 23 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.19 5.71 7.43 -2.91 -0.02 5.69 16 28 H 0.26 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.24 6.43 -2.39 -0.02 2.22 16 31 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -75.66 265.31 5.66 -70.00 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.06 Total: 9.48 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 6.46 Total: -7.73 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -3.65 Total: -91.73 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.84 Total: 45.56 kcal Total: -75.66 5.66 -70.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085168175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.411 kcal (2) G-P(sol) polarization free energy of solvation -75.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds