Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46896 * 2 1 4 4 C 1.34388 * 126.45716 * 264.99275 * 3 2 1 5 5 N 1.30930 * 109.48962 * 180.02562 * 4 3 2 6 6 C 1.33157 * 109.82908 * 359.72280 * 5 4 3 7 7 C 1.38182 * 107.54454 * 0.44240 * 6 5 4 8 8 C 1.41482 * 126.97459 * 179.83602 * 7 6 5 9 9 O 1.21420 * 120.00077 * 179.68284 * 8 7 6 10 10 C 1.50703 * 120.00156 * 359.68387 * 8 7 6 11 11 H 1.09007 * 109.46560 * 330.00092 * 10 8 7 12 12 C 1.52998 * 109.47077 * 90.00094 * 10 8 7 13 13 C 1.50701 * 109.47151 * 210.00448 * 10 8 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99694 * 180.27762 * 13 10 8 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09000 * 109.46617 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47439 * 300.00224 * 1 2 3 23 23 H 1.09008 * 109.46338 * 60.00230 * 1 2 3 24 24 H 1.08997 * 109.47439 * 239.99775 * 2 1 3 25 25 H 1.09003 * 109.46400 * 119.99295 * 2 1 3 26 26 H 1.07995 * 125.25749 * 0.02857 * 4 3 2 27 27 H 1.07993 * 126.22994 * 180.27394 * 6 5 4 28 28 H 1.09005 * 109.46870 * 300.00040 * 12 10 8 29 29 H 1.08998 * 109.47156 * 59.99979 * 12 10 8 30 30 H 1.09004 * 109.46783 * 180.02562 * 12 10 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3734 2.1027 -1.0768 5 7 2.7599 3.2943 -0.6961 6 6 2.6673 3.3976 0.6282 7 6 2.2014 2.1886 1.1088 8 6 1.9556 1.8476 2.4597 9 8 1.5384 0.7425 2.7407 10 6 2.2115 2.8561 3.5500 11 1 3.0216 3.5200 3.2479 12 6 0.9434 3.6767 3.7934 13 6 2.5965 2.1383 4.8179 14 1 2.6501 1.0597 4.8328 15 6 2.8742 2.8582 5.9604 16 7 2.8086 4.1716 5.9423 17 14 3.3440 1.9681 7.5341 18 1 4.8180 1.7948 7.5837 19 1 2.8998 2.7657 8.7054 20 1 2.6877 0.6364 7.5644 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.3445 1.7535 -2.0983 27 1 2.9142 4.2669 1.2195 28 1 0.6649 4.1959 2.8763 29 1 0.1333 3.0129 4.0954 30 1 1.1286 4.4064 4.5817 31 1 3.0036 4.6781 6.7463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085183395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = 13.940621 kcal Electronic energy + Delta-G solvation = -15212.261222 eV Core-core repulsion = 12687.805050 eV Total energy + Delta-G solvation = -2524.456171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.85403 -38.15599 -34.89549 -33.69636 -30.98283 -30.07726 -29.10339 -25.18646 -24.20202 -23.42726 -21.56628 -20.47034 -18.50800 -16.87785 -16.15463 -15.44165 -14.97855 -14.70169 -14.31778 -13.86664 -13.50850 -13.26031 -13.09463 -12.56312 -12.38018 -12.02919 -11.56412 -11.29400 -11.04039 -10.76078 -10.66016 -10.26258 -10.09385 -9.80832 -9.47249 -8.99786 -8.60918 -8.34817 -8.17126 -6.04340 -4.09333 1.54875 2.88899 3.14735 3.31320 3.37566 3.43435 3.86175 4.42139 4.70587 4.77255 4.93257 5.03691 5.27863 5.29134 5.55475 5.60172 5.67837 5.87773 6.08896 6.22852 6.61206 6.74190 6.90943 6.92093 7.01309 7.34165 7.50634 7.76283 7.99889 8.16561 8.24472 8.63089 8.94543 9.55103 11.02553 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038710 B = 0.008143 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.147049 B = 3437.691829 C = 3803.624042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.429 5.429 4 C 0.188 3.812 5 N -0.505 5.505 6 C 0.055 3.945 7 C -0.104 4.104 8 C 0.426 3.574 9 O -0.480 6.480 10 C 0.017 3.983 11 H 0.053 0.947 12 C -0.128 4.128 13 C -0.505 4.505 14 H 0.065 0.935 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.203 0.797 27 H 0.185 0.815 28 H 0.014 0.986 29 H 0.031 0.969 30 H 0.095 0.905 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 -4.777 -11.419 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.111 5.111 4 C -0.093 4.093 5 N -0.224 5.224 6 C -0.099 4.099 7 C -0.218 4.218 8 C 0.307 3.693 9 O -0.357 6.357 10 C -0.003 4.003 11 H 0.071 0.929 12 C -0.186 4.186 13 C -0.543 4.543 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.124 0.876 26 H 0.220 0.780 27 H 0.202 0.798 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.638 -4.791 -11.679 12.896 hybrid contribution 0.024 -1.007 1.226 1.587 sum -2.614 -5.798 -10.453 12.236 Atomic orbital electron populations 1.22060 0.93912 1.03016 1.03030 1.21994 0.96081 0.79425 1.04849 1.45712 1.45867 1.12644 1.06871 1.24985 1.01970 0.88722 0.93620 1.70078 1.21265 1.17842 1.13205 1.23250 0.99473 0.96786 0.90428 1.21705 1.15013 0.94107 0.90944 1.21336 0.72161 0.89293 0.86539 1.90380 1.35928 1.23414 1.85963 1.19048 0.96414 0.92981 0.91859 0.92945 1.21668 0.96198 1.00375 1.00325 1.21022 1.45980 0.93569 0.93770 0.91670 1.24920 0.95256 0.94889 0.98887 1.69859 1.49176 1.05101 1.28874 0.86498 0.78700 0.79755 0.82540 1.20636 1.21147 1.19827 0.90675 0.91211 0.92455 0.89334 0.87605 0.78039 0.79793 0.96646 0.95023 0.88631 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.10 1.26 6.20 -4.04 -0.03 1.24 16 3 N -0.43 -6.82 2.77 -115.85 -0.32 -7.14 16 4 C 0.19 2.69 12.49 -90.61 -1.13 1.56 16 5 N -0.51 -8.71 11.19 -14.10 -0.16 -8.87 16 6 C 0.06 1.02 11.20 -17.00 -0.19 0.83 16 7 C -0.10 -2.03 6.76 -83.70 -0.57 -2.59 16 8 C 0.43 9.64 5.99 -33.07 -0.20 9.44 16 9 O -0.48 -11.48 14.23 5.44 0.08 -11.40 16 10 C 0.02 0.41 2.29 -92.92 -0.21 0.20 16 11 H 0.05 1.32 7.11 -51.93 -0.37 0.95 16 12 C -0.13 -3.03 8.95 37.16 0.33 -2.70 16 13 C -0.51 -14.07 8.32 -34.44 -0.29 -14.36 16 14 H 0.07 1.88 7.14 -52.49 -0.37 1.51 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.07 1.06 7.90 -51.93 -0.41 0.65 16 23 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 24 H 0.09 0.80 8.13 -51.93 -0.42 0.37 16 25 H 0.11 1.59 6.72 -51.93 -0.35 1.25 16 26 H 0.20 1.90 8.06 -52.49 -0.42 1.47 16 27 H 0.19 3.22 7.44 -52.49 -0.39 2.83 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.45 6.06 -51.93 -0.31 2.13 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 267.53 15.07 4.03 4.03 Total: -1.00 -31.08 267.53 -6.64 -37.72 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.88 Total: -0.25 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.99 Total: -6.34 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.15 Total: -40.21 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.08 -6.64 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085183395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.656 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds