Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46896 * 2 1 4 4 C 1.34388 * 126.45716 * 264.99275 * 3 2 1 5 5 N 1.30930 * 109.48962 * 180.02562 * 4 3 2 6 6 C 1.33157 * 109.82908 * 359.72280 * 5 4 3 7 7 C 1.38182 * 107.54454 * 0.44240 * 6 5 4 8 8 C 1.41482 * 126.97459 * 179.83602 * 7 6 5 9 9 O 1.21420 * 120.00077 * 179.68284 * 8 7 6 10 10 C 1.50703 * 120.00156 * 359.68387 * 8 7 6 11 11 H 1.09007 * 109.46560 * 330.00092 * 10 8 7 12 12 C 1.52998 * 109.47077 * 90.00094 * 10 8 7 13 13 C 1.50701 * 109.47151 * 210.00448 * 10 8 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99694 * 180.27762 * 13 10 8 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09000 * 109.46617 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47439 * 300.00224 * 1 2 3 23 23 H 1.09008 * 109.46338 * 60.00230 * 1 2 3 24 24 H 1.08997 * 109.47439 * 239.99775 * 2 1 3 25 25 H 1.09003 * 109.46400 * 119.99295 * 2 1 3 26 26 H 1.07995 * 125.25749 * 0.02857 * 4 3 2 27 27 H 1.07993 * 126.22994 * 180.27394 * 6 5 4 28 28 H 1.09005 * 109.46870 * 300.00040 * 12 10 8 29 29 H 1.08998 * 109.47156 * 59.99979 * 12 10 8 30 30 H 1.09004 * 109.46783 * 180.02562 * 12 10 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3734 2.1027 -1.0768 5 7 2.7599 3.2943 -0.6961 6 6 2.6673 3.3976 0.6282 7 6 2.2014 2.1886 1.1088 8 6 1.9556 1.8476 2.4597 9 8 1.5384 0.7425 2.7407 10 6 2.2115 2.8561 3.5500 11 1 3.0216 3.5200 3.2479 12 6 0.9434 3.6767 3.7934 13 6 2.5965 2.1383 4.8179 14 1 2.6501 1.0597 4.8328 15 6 2.8742 2.8582 5.9604 16 7 2.8086 4.1716 5.9423 17 14 3.3440 1.9681 7.5341 18 1 4.8180 1.7948 7.5837 19 1 2.8998 2.7657 8.7054 20 1 2.6877 0.6364 7.5644 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.3445 1.7535 -2.0983 27 1 2.9142 4.2669 1.2195 28 1 0.6649 4.1959 2.8763 29 1 0.1333 3.0129 4.0954 30 1 1.1286 4.4064 4.5817 31 1 3.0036 4.6781 6.7463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085183395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -4.114324 kcal Electronic energy + Delta-G solvation = -15213.044143 eV Core-core repulsion = 12687.805050 eV Total energy + Delta-G solvation = -2525.239093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.16744 -39.89752 -36.19329 -35.56107 -32.87752 -31.28956 -30.58661 -27.27609 -25.68934 -24.67165 -23.11363 -21.87623 -20.03009 -18.42380 -18.04334 -16.98463 -16.62136 -16.19362 -15.80458 -15.27962 -14.94675 -14.72216 -14.67876 -14.20311 -13.63506 -13.46941 -13.11095 -12.92996 -12.68200 -12.66065 -12.26868 -12.23280 -12.09392 -11.16720 -11.05363 -10.71683 -10.56795 -10.26198 -9.56591 -8.15042 -6.27364 0.07896 1.40085 1.41103 1.52052 1.71443 1.81408 2.28825 2.42792 3.13564 3.47789 3.73888 3.76452 4.06235 4.17231 4.35112 4.45003 4.51630 4.72075 4.76878 4.79649 4.98917 5.04118 5.15255 5.22819 5.46691 5.53690 5.68992 5.94032 6.19564 6.21091 6.74391 6.79351 6.98803 7.39832 8.90537 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038710 B = 0.008143 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.147049 B = 3437.691829 C = 3803.624042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.430 5.430 4 C 0.222 3.778 5 N -0.530 5.530 6 C 0.062 3.938 7 C -0.143 4.143 8 C 0.430 3.570 9 O -0.506 6.506 10 C 0.010 3.990 11 H 0.044 0.956 12 C -0.115 4.115 13 C -0.530 4.530 14 H 0.045 0.955 15 C 0.021 3.979 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.278 1.278 21 H 0.098 0.902 22 H 0.027 0.973 23 H 0.076 0.924 24 H 0.140 0.860 25 H 0.077 0.923 26 H 0.260 0.740 27 H 0.183 0.817 28 H 0.040 0.960 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -5.484 -13.429 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.110 5.110 4 C -0.060 4.060 5 N -0.248 5.248 6 C -0.094 4.094 7 C -0.256 4.256 8 C 0.313 3.687 9 O -0.386 6.386 10 C -0.009 4.009 11 H 0.061 0.939 12 C -0.173 4.173 13 C -0.568 4.568 14 H 0.063 0.937 15 C -0.179 4.179 16 N -0.547 5.547 17 Si 0.780 3.220 18 H -0.198 1.198 19 H -0.200 1.200 20 H -0.203 1.203 21 H 0.117 0.883 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.158 0.842 25 H 0.095 0.905 26 H 0.276 0.724 27 H 0.200 0.800 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.561 -5.500 -13.689 14.974 hybrid contribution 0.006 -0.781 1.725 1.894 sum -2.556 -6.281 -11.964 13.752 Atomic orbital electron populations 1.22027 0.93291 1.04235 1.01824 1.22262 0.96586 0.77960 1.05947 1.45895 1.45555 1.13508 1.06044 1.26100 0.97598 0.87212 0.95059 1.70129 1.22817 1.19713 1.12180 1.23334 0.98342 0.96408 0.91312 1.21103 1.18261 0.95572 0.90635 1.20991 0.71653 0.88256 0.87812 1.90359 1.37607 1.24016 1.86590 1.19001 0.96402 0.93486 0.92032 0.93854 1.21480 0.95443 0.99592 1.00784 1.21200 1.47059 0.92892 0.95689 0.93652 1.25606 0.95063 0.95673 1.01544 1.69946 1.49152 1.05929 1.29721 0.85603 0.78641 0.78477 0.79235 1.19789 1.20031 1.20266 0.88326 0.95383 0.90493 0.84194 0.90485 0.72411 0.79970 0.94110 0.96106 0.90597 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.09 2.16 6.20 86.38 0.54 2.69 16 3 N -0.43 -12.63 2.77 -520.45 -1.44 -14.08 16 4 C 0.22 5.43 12.49 180.34 2.25 7.68 16 5 N -0.53 -16.91 11.19 -198.54 -2.22 -19.13 16 6 C 0.06 2.23 11.20 84.48 0.95 3.18 16 7 C -0.14 -5.51 6.76 38.90 0.26 -5.24 16 8 C 0.43 20.02 5.99 26.49 0.16 20.18 16 9 O -0.51 -25.16 14.23 -3.47 -0.05 -25.21 16 10 C 0.01 0.53 2.29 -12.29 -0.03 0.51 16 11 H 0.04 2.27 7.11 -2.38 -0.02 2.25 16 12 C -0.12 -5.61 8.95 71.98 0.64 -4.96 16 13 C -0.53 -30.53 8.32 25.60 0.21 -30.31 16 14 H 0.05 2.73 7.14 -2.91 -0.02 2.71 16 15 C 0.02 1.16 5.30 84.65 0.45 1.61 16 16 N -0.91 -51.34 11.31 21.45 0.24 -51.09 16 17 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.03 0.84 7.90 -2.39 -0.02 0.82 16 23 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.14 1.81 8.13 -2.39 -0.02 1.79 16 25 H 0.08 2.28 6.72 -2.39 -0.02 2.26 16 26 H 0.26 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.18 6.44 7.44 -2.91 -0.02 6.42 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 3.99 6.06 -2.38 -0.01 3.97 16 31 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.29 267.53 5.85 -63.44 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.12 Total: 6.84 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 6.17 Total: -7.33 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -3.42 Total: -84.30 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.29 5.85 -63.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085183395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.328 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds