Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 N 1.46500 * 109.47326 * 180.02562 * 3 2 1 5 5 C 1.34390 * 126.45404 * 265.12519 * 4 3 2 6 6 N 1.30930 * 109.48622 * 180.26859 * 5 4 3 7 7 C 1.33153 * 109.82607 * 359.76462 * 6 5 4 8 8 C 1.38175 * 107.54827 * 359.97438 * 7 6 5 9 9 C 1.41479 * 126.97254 * 179.97438 * 8 7 6 10 10 O 1.21422 * 120.00141 * 179.75383 * 9 8 7 11 11 C 1.50706 * 120.00358 * 0.02887 * 9 8 7 12 12 C 1.50696 * 109.47259 * 179.72498 * 11 9 8 13 13 H 1.08002 * 120.00318 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99922 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99824 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47212 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46550 * 120.00565 * 16 14 12 19 19 H 1.48492 * 109.47285 * 240.00185 * 16 14 12 20 20 H 1.08996 * 109.47071 * 299.99505 * 1 2 3 21 21 H 1.08998 * 109.47074 * 60.00515 * 1 2 3 22 22 H 1.09000 * 109.46824 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47696 * 240.00000 * 2 1 3 24 24 H 1.09000 * 109.47427 * 120.00169 * 2 1 3 25 25 H 1.09000 * 109.47203 * 60.00117 * 3 2 1 26 26 H 1.09000 * 109.47120 * 300.00357 * 3 2 1 27 27 H 1.07998 * 125.25744 * 0.03501 * 5 4 3 28 28 H 1.08001 * 126.22225 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46564 * 299.72759 * 11 9 8 30 30 H 1.08998 * 109.47012 * 59.71813 * 11 9 8 31 31 H 0.97005 * 119.99648 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3040 1.5343 1.0761 6 7 5.5561 1.5077 0.6944 7 6 5.6220 1.3937 -0.6306 8 6 4.3267 1.3453 -1.1095 9 6 3.9228 1.2270 -2.4602 10 8 2.7418 1.1917 -2.7399 11 6 4.9584 1.1384 -3.5515 12 6 4.2715 1.0131 -4.8870 13 1 3.1929 0.9986 -4.9402 14 6 5.0200 0.9171 -6.0409 15 7 6.3335 0.9343 -5.9760 16 14 4.1686 0.7610 -7.6962 17 1 2.6968 0.7654 -7.4982 18 1 4.5547 1.9048 -8.5612 19 1 4.5773 -0.5105 -8.3453 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.9655 1.6208 2.0980 28 1 6.5237 1.3468 -1.2231 29 1 5.5736 2.0382 -3.5423 30 1 5.5891 0.2654 -3.3839 31 1 6.8601 0.8663 -6.7879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085186294.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = 6.857112 kcal Electronic energy + Delta-G solvation = -14871.333400 eV Core-core repulsion = 12346.570065 eV Total energy + Delta-G solvation = -2524.763335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.87688 -38.01828 -35.58443 -32.96664 -31.95977 -30.53301 -28.29982 -26.43029 -24.25318 -22.29585 -21.76867 -20.76093 -18.68734 -16.94857 -16.18973 -15.37157 -15.12433 -14.92112 -14.47759 -14.13438 -13.66274 -13.31691 -13.25414 -12.91982 -12.37479 -12.12018 -11.93814 -11.49257 -11.23142 -10.87381 -10.79610 -10.64096 -10.06701 -9.83612 -9.46419 -9.27699 -8.64424 -8.45531 -8.19479 -6.06346 -4.06894 1.52719 2.86424 3.12101 3.31786 3.39145 3.46296 3.83381 4.44077 4.65846 4.73484 4.80976 4.92642 5.13108 5.27948 5.31706 5.47892 5.54128 5.61637 5.78686 5.87468 6.00692 6.15547 6.25954 6.70962 6.88323 7.23699 7.31743 7.34766 7.92486 8.13692 8.21592 8.63307 9.02284 9.57849 11.05792 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.007783 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.960372 B = 3596.721409 C = 4407.531479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.103 3.897 4 N -0.429 5.429 5 C 0.188 3.812 6 N -0.505 5.505 7 C 0.053 3.947 8 C -0.106 4.106 9 C 0.418 3.582 10 O -0.476 6.476 11 C -0.011 4.011 12 C -0.515 4.515 13 H 0.073 0.927 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.203 0.797 28 H 0.185 0.815 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 0.132 12.998 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.019 4.019 4 N -0.110 5.110 5 C -0.093 4.093 6 N -0.223 5.223 7 C -0.102 4.102 8 C -0.219 4.219 9 C 0.299 3.701 10 O -0.353 6.353 11 C -0.049 4.049 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.220 0.780 28 H 0.202 0.798 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.209 0.164 13.271 15.104 hybrid contribution -0.880 -0.121 -1.292 1.568 sum -8.090 0.043 11.979 14.455 Atomic orbital electron populations 1.21655 0.94390 1.02271 1.02064 1.21812 0.96795 0.95456 1.03238 1.22109 0.75746 0.99243 1.04847 1.45680 1.07795 1.50639 1.06865 1.24988 0.86081 1.04607 0.93625 1.70075 1.18601 1.20522 1.13141 1.23240 0.95983 1.00448 0.90493 1.21729 0.91792 1.17375 0.91037 1.21320 0.91659 0.70564 0.86595 1.90388 1.20601 1.38471 1.85878 1.19455 0.93897 0.99806 0.91703 1.21187 0.94171 1.50067 0.89910 0.90901 1.24993 0.94824 0.95180 0.99427 1.69965 1.04447 1.50708 1.28541 0.86430 0.79930 0.77592 0.83493 1.19593 1.20975 1.20974 0.92754 0.91925 0.92144 0.90456 0.91848 0.89386 0.87588 0.78046 0.79752 0.92617 0.92605 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.66 6.26 -26.73 -0.17 -1.82 16 3 C 0.10 1.32 5.47 -4.04 -0.02 1.30 16 4 N -0.43 -6.69 2.77 -115.86 -0.32 -7.02 16 5 C 0.19 2.65 12.49 -90.61 -1.13 1.52 16 6 N -0.51 -8.54 11.19 -14.10 -0.16 -8.70 16 7 C 0.05 0.95 11.38 -17.00 -0.19 0.76 16 8 C -0.11 -2.01 6.76 -83.71 -0.57 -2.58 16 9 C 0.42 9.35 6.94 -33.07 -0.23 9.12 16 10 O -0.48 -11.30 13.70 5.43 0.07 -11.23 16 11 C -0.01 -0.28 4.77 -29.03 -0.14 -0.42 16 12 C -0.52 -14.66 8.92 -34.44 -0.31 -14.97 16 13 H 0.07 2.13 6.75 -52.49 -0.35 1.78 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.21 7.87 -51.93 -0.41 0.80 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 26 H 0.11 1.59 6.73 -51.93 -0.35 1.24 16 27 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.19 3.09 7.96 -52.49 -0.42 2.67 16 29 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -32.08 272.83 -7.11 -39.19 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.05 Total: -1.08 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.48 Total: -6.68 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.26 Total: -41.14 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.08 -7.11 -39.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085186294.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.048 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds