Wall clock time and date at job start Mon Mar 30 2020 02:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 N 1.46506 * 109.47152 * 119.99659 * 2 1 3 5 5 C 1.34394 * 126.45752 * 299.97848 * 4 2 1 6 6 N 1.30919 * 109.48851 * 180.02562 * 5 4 2 7 7 C 1.33148 * 109.83001 * 359.97438 * 6 5 4 8 8 C 1.38174 * 107.54683 * 0.02562 * 7 6 5 9 9 C 1.41492 * 126.97225 * 179.97438 * 8 7 6 10 10 O 1.21424 * 119.99696 * 180.02562 * 9 8 7 11 11 C 1.50692 * 120.00208 * 0.02562 * 9 8 7 12 12 C 1.50697 * 109.47313 * 179.97438 * 11 9 8 13 13 H 1.08003 * 120.00113 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00313 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00048 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00126 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47063 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47104 * 119.99921 * 16 14 12 19 19 H 1.48491 * 109.47176 * 240.00175 * 16 14 12 20 20 H 1.09003 * 109.46872 * 60.00404 * 1 2 3 21 21 H 1.08995 * 109.47189 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47270 * 300.00202 * 1 2 3 23 23 H 1.09002 * 109.47516 * 239.99336 * 2 1 3 24 24 H 1.09007 * 109.47218 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.46778 * 299.99265 * 3 2 1 26 26 H 1.08999 * 109.47236 * 59.99778 * 3 2 1 27 27 H 1.07999 * 125.25143 * 359.76701 * 5 4 2 28 28 H 1.08001 * 126.22700 * 179.97438 * 7 6 5 29 29 H 1.09007 * 109.47315 * 299.99744 * 11 9 8 30 30 H 1.09000 * 109.47581 * 59.99980 * 11 9 8 31 31 H 0.96994 * 120.00098 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7753 -0.3461 2.4724 6 7 2.3732 -1.1908 3.2742 7 6 3.0216 -2.1091 2.5608 8 6 2.8168 -1.8201 1.2252 9 6 3.3215 -2.5343 0.1129 10 8 3.0610 -2.1655 -1.0143 11 6 4.1823 -3.7525 0.3271 12 6 4.5853 -4.3239 -1.0079 13 1 4.2519 -3.8518 -1.9202 14 6 5.3807 -5.4487 -1.0646 15 7 5.7881 -6.0227 0.0463 16 14 5.8797 -6.1573 -2.7194 17 1 5.2957 -5.3325 -3.8075 18 1 7.3602 -6.1511 -2.8344 19 1 5.3802 -7.5512 -2.8318 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.1822 0.4996 2.7876 28 1 3.6027 -2.9300 2.9544 29 1 5.0746 -3.4729 0.8873 30 1 3.6210 -4.5002 0.8873 31 1 6.3479 -6.8138 0.0064 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085187996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:30 Heat of formation + Delta-G solvation = -8.636043 kcal Electronic energy + Delta-G solvation = -14968.284023 eV Core-core repulsion = 12442.848854 eV Total energy + Delta-G solvation = -2525.435169 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.24418 -39.82215 -37.03744 -35.11488 -32.35359 -31.80371 -30.02314 -28.26449 -26.22803 -24.15143 -23.55481 -21.54174 -20.08291 -18.50533 -17.82669 -16.82769 -16.72621 -16.16565 -16.08082 -15.31703 -15.31162 -14.81600 -14.61557 -14.12532 -14.00526 -13.24263 -13.16572 -13.10155 -12.83467 -12.60032 -12.47799 -12.34241 -12.03878 -11.43869 -11.12772 -10.71315 -10.63381 -10.39638 -9.59317 -8.25058 -6.33642 0.03754 1.38978 1.39515 1.53545 1.65867 1.77564 2.25364 2.40166 3.09850 3.42068 3.60104 3.69057 3.91411 4.13885 4.15739 4.43008 4.48338 4.61028 4.71252 4.74368 4.80893 5.00431 5.13205 5.17071 5.27103 5.35272 5.49939 5.70849 6.09902 6.17889 6.72143 6.78796 6.95284 7.35123 8.87256 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039471 B = 0.007278 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.219036 B = 3846.386835 C = 4364.549840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 C -0.151 4.151 4 N -0.421 5.421 5 C 0.221 3.779 6 N -0.527 5.527 7 C 0.063 3.937 8 C -0.146 4.146 9 C 0.427 3.573 10 O -0.506 6.506 11 C -0.008 4.008 12 C -0.542 4.542 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.923 5.923 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.273 1.273 20 H 0.099 0.901 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.253 0.747 28 H 0.187 0.813 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 13.918 2.619 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.005 4.005 3 C -0.208 4.208 4 N -0.101 5.101 5 C -0.060 4.060 6 N -0.246 5.246 7 C -0.093 4.093 8 C -0.260 4.260 9 C 0.311 3.689 10 O -0.386 6.386 11 C -0.045 4.045 12 C -0.580 4.580 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.563 5.563 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.198 1.198 20 H 0.118 0.882 21 H 0.061 0.939 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.269 0.731 28 H 0.204 0.796 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.974 14.116 2.765 17.504 hybrid contribution 0.630 -0.891 -1.478 1.838 sum -9.345 13.224 1.287 16.244 Atomic orbital electron populations 1.22127 0.90719 1.02561 1.05392 1.22152 0.97301 0.95057 0.85960 1.22128 1.00956 0.92321 1.05393 1.45987 1.34983 1.19949 1.09182 1.25862 1.00591 1.01129 0.78420 1.70142 1.14134 1.06176 1.34124 1.23374 0.98941 0.98915 0.88041 1.21055 1.09386 0.97184 0.98333 1.20943 0.77142 0.84779 0.86081 1.90312 1.53607 1.66746 1.27932 1.19293 0.95254 0.91539 0.98457 1.21425 1.31653 1.11788 0.93165 0.92487 1.25806 0.95625 0.96841 1.00584 1.70045 1.36251 1.21605 1.28409 0.85419 0.78204 0.78205 0.79354 1.19760 1.19804 1.19792 0.88187 0.93910 0.89261 0.88863 0.93906 0.88188 0.89258 0.73088 0.79599 0.93545 0.93547 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.24 71.98 0.67 -2.02 16 2 C 0.10 2.41 3.51 44.99 0.16 2.57 16 3 C -0.15 -2.68 9.24 71.98 0.67 -2.02 16 4 N -0.42 -12.69 2.64 -498.01 -1.32 -14.01 16 5 C 0.22 5.60 11.48 180.35 2.07 7.67 16 6 N -0.53 -16.89 11.19 -198.54 -2.22 -19.11 16 7 C 0.06 2.28 11.38 84.48 0.96 3.24 16 8 C -0.15 -5.69 6.76 38.90 0.26 -5.43 16 9 C 0.43 20.13 6.94 26.49 0.18 20.32 16 10 O -0.51 -25.54 13.52 -3.48 -0.05 -25.58 16 11 C -0.01 -0.42 4.77 29.10 0.14 -0.28 16 12 C -0.54 -32.08 8.92 25.60 0.23 -31.86 16 13 H 0.06 3.49 6.75 -2.91 -0.02 3.47 16 14 C 0.01 0.59 5.46 84.65 0.46 1.05 16 15 N -0.92 -54.67 13.29 21.45 0.28 -54.39 16 16 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.09 1.10 7.95 -2.39 -0.02 1.08 16 23 H 0.09 3.10 5.47 -2.39 -0.01 3.09 16 24 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.09 7.95 -2.39 -0.02 1.07 16 27 H 0.25 3.43 8.06 -2.91 -0.02 3.40 16 28 H 0.19 6.41 7.96 -2.91 -0.02 6.38 16 29 H 0.05 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -71.39 270.49 5.64 -65.75 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.12 Total: 6.76 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.80 Total: -6.75 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -3.25 Total: -87.51 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.39 5.64 -65.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085187996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.118 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds