Wall clock time and date at job start Mon Mar 30 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47414 * 2 1 4 4 C 1.46900 * 111.00234 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.38292 * 119.53748 * 95.00048 * 5 4 3 7 7 C 1.38495 * 119.23366 * 180.02562 * 6 5 4 8 8 C 1.39296 * 118.36163 * 359.97438 * 7 6 5 9 9 O 1.35759 * 120.48737 * 179.97438 * 8 7 6 10 10 C 1.34823 * 116.99953 * 5.47670 * 9 8 7 11 11 H 1.08004 * 120.00469 * 354.94441 * 10 9 8 12 12 C 1.38661 * 120.00223 * 174.94085 * 10 9 8 13 13 N 1.31557 * 119.99560 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00148 * 179.72373 * 12 10 9 15 15 H 1.48500 * 109.46915 * 180.27656 * 14 12 10 16 16 H 1.48500 * 109.47135 * 300.27392 * 14 12 10 17 17 H 1.48499 * 109.46993 * 60.28089 * 14 12 10 18 18 C 1.38852 * 119.02220 * 0.25669 * 8 7 6 19 19 N 1.31810 * 120.66974 * 359.49499 * 18 8 7 20 20 H 1.09004 * 109.47080 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47099 * 299.99423 * 1 2 3 22 22 H 1.08997 * 109.47426 * 59.99678 * 1 2 3 23 23 H 1.09006 * 109.46999 * 240.00039 * 2 1 3 24 24 H 1.08997 * 109.47426 * 120.00322 * 2 1 3 25 25 H 1.00899 * 110.99970 * 303.95982 * 3 2 1 26 26 H 1.08999 * 109.46992 * 60.00164 * 4 3 2 27 27 H 1.09000 * 109.47018 * 300.00723 * 4 3 2 28 28 H 1.07994 * 120.38479 * 0.02562 * 6 5 4 29 29 H 1.08001 * 120.82209 * 179.97438 * 7 6 5 30 30 H 0.97001 * 120.00205 * 359.73044 * 13 12 10 31 31 H 1.08003 * 119.66315 * 179.72160 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9524 2.8578 0.0000 6 6 4.2628 3.4734 1.1989 7 6 4.6883 4.7914 1.1922 8 6 4.7877 5.4484 -0.0320 9 8 5.1998 6.7407 -0.0887 10 6 5.6089 7.3039 1.0660 11 1 5.5225 6.7576 1.9937 12 6 6.1408 8.5844 1.0626 13 7 6.2457 9.2500 -0.0674 14 14 6.7006 9.3676 2.6634 15 1 7.2206 10.7318 2.3917 16 1 5.5519 9.4534 3.6007 17 1 7.7742 8.5404 3.2703 18 6 4.4534 4.7640 -1.1930 19 7 4.0571 3.5079 -1.1425 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6442 1.9013 -0.7813 26 1 3.8647 0.9204 -0.8908 27 1 3.8654 0.9200 0.8891 28 1 4.1743 2.9327 2.1295 29 1 4.9369 5.2972 2.1135 30 1 5.9546 8.8435 -0.8986 31 1 4.5224 5.2649 -2.1474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086790977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:08 Heat of formation + Delta-G solvation = -6.609725 kcal Electronic energy + Delta-G solvation = -14333.941416 eV Core-core repulsion = 11808.594114 eV Total energy + Delta-G solvation = -2525.347301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71793 -37.59023 -36.11308 -32.55944 -31.60230 -31.18741 -28.72513 -25.62209 -24.18014 -22.78485 -22.03798 -21.11445 -18.49863 -17.00046 -16.33896 -15.59902 -15.11188 -15.02481 -14.05654 -13.96158 -13.91363 -13.73277 -13.24233 -12.71514 -12.44334 -12.29556 -11.85638 -11.56929 -11.22590 -11.10079 -10.95349 -10.62273 -10.36128 -9.88440 -9.05106 -8.86498 -8.80673 -8.35703 -7.50904 -6.90240 -4.19013 1.93911 2.09542 3.18324 3.22840 3.39616 4.01529 4.18968 4.66631 4.82300 4.99220 5.06267 5.13674 5.20109 5.30492 5.41767 5.57115 5.67742 5.76827 5.81304 5.90167 6.01374 6.08616 6.21391 6.50247 6.83872 6.97833 7.07623 7.34307 7.42167 7.45115 8.24927 8.69194 8.78327 9.42498 10.53638 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059696 B = 0.005162 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.929675 B = 5422.587515 C = 5646.822664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.687 5.687 4 C 0.130 3.870 5 C 0.016 3.984 6 C -0.097 4.097 7 C -0.198 4.198 8 C 0.109 3.891 9 O -0.190 6.190 10 C -0.474 4.474 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.873 5.873 14 Si 1.096 2.904 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.026 3.974 19 N -0.441 5.441 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.345 0.655 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.284 0.716 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -12.762 2.322 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.319 5.319 4 C 0.001 3.999 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.224 4.224 8 C 0.053 3.947 9 O -0.092 6.092 10 C -0.550 4.550 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.504 5.504 14 Si 0.920 3.080 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.136 4.136 19 N -0.152 5.152 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.137 -11.530 2.703 12.909 hybrid contribution -0.284 -1.276 -0.619 1.446 sum -5.421 -12.805 2.084 14.061 Atomic orbital electron populations 1.21765 0.95155 1.01373 1.02481 1.21913 0.95568 0.89938 1.00217 1.60576 1.07907 1.12869 1.50588 1.20460 0.87236 0.91752 1.00469 1.20341 1.06504 0.96375 0.88877 1.21535 0.97488 0.94512 0.98194 1.21557 1.06773 0.95453 0.98633 1.20322 0.94351 0.85621 0.94430 1.83662 1.70359 1.19422 1.35806 1.22260 1.45652 1.02209 0.84866 0.89773 1.26621 0.94963 0.92016 1.05724 1.70576 1.40785 1.39334 0.99699 0.83103 0.76797 0.76714 0.71430 1.19625 1.20575 1.20611 1.21688 1.05236 0.90217 0.96429 1.67164 1.10963 1.07845 1.29181 0.92422 0.91843 0.92860 0.95579 0.91226 0.83694 0.94426 0.90541 0.86258 0.84562 0.90601 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.17 37.16 0.38 -1.03 16 2 C 0.05 0.57 6.40 -3.82 -0.02 0.55 16 3 N -0.69 -9.45 6.49 -115.06 -0.75 -10.20 16 4 C 0.13 1.92 5.99 -4.98 -0.03 1.89 16 5 C 0.02 0.30 6.29 -82.56 -0.52 -0.22 16 6 C -0.10 -1.82 9.71 -39.47 -0.38 -2.21 16 7 C -0.20 -4.31 9.27 -39.09 -0.36 -4.67 16 8 C 0.11 2.62 6.67 -38.96 -0.26 2.36 16 9 O -0.19 -5.25 9.17 0.04 0.00 -5.24 16 10 C -0.47 -13.04 9.50 30.89 0.29 -12.74 16 11 H 0.08 2.17 5.26 -52.48 -0.28 1.89 16 12 C 0.01 0.36 5.49 -17.51 -0.10 0.27 16 13 N -0.87 -25.47 13.70 55.48 0.76 -24.71 16 14 Si 1.10 23.03 29.92 -169.99 -5.09 17.94 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 18 C 0.03 0.57 11.15 -17.33 -0.19 0.38 16 19 N -0.44 -8.95 10.26 -9.31 -0.10 -9.05 16 20 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.34 4.94 8.72 -39.29 -0.34 4.60 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 28 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.14 2.93 5.76 -52.49 -0.30 2.63 16 30 H 0.28 8.45 7.97 -40.82 -0.33 8.12 16 31 H 0.15 2.98 8.06 -52.48 -0.42 2.56 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -29.62 272.23 -6.10 -35.72 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.84 Total: 6.86 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.20 Total: -15.43 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.08 Total: -43.96 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.09 Total: 17.94 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.62 -6.10 -35.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086790977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.112 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds