Wall clock time and date at job start Mon Mar 30 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47414 * 2 1 4 4 C 1.46900 * 111.00234 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.38292 * 119.53748 * 95.00048 * 5 4 3 7 7 C 1.38495 * 119.23366 * 180.02562 * 6 5 4 8 8 C 1.39296 * 118.36163 * 359.97438 * 7 6 5 9 9 O 1.35759 * 120.48737 * 179.97438 * 8 7 6 10 10 C 1.34823 * 116.99953 * 5.47670 * 9 8 7 11 11 H 1.08004 * 120.00469 * 354.94441 * 10 9 8 12 12 C 1.38661 * 120.00223 * 174.94085 * 10 9 8 13 13 N 1.31557 * 119.99560 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00148 * 179.72373 * 12 10 9 15 15 H 1.48500 * 109.46915 * 180.27656 * 14 12 10 16 16 H 1.48500 * 109.47135 * 300.27392 * 14 12 10 17 17 H 1.48499 * 109.46993 * 60.28089 * 14 12 10 18 18 C 1.38852 * 119.02220 * 0.25669 * 8 7 6 19 19 N 1.31810 * 120.66974 * 359.49499 * 18 8 7 20 20 H 1.09004 * 109.47080 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47099 * 299.99423 * 1 2 3 22 22 H 1.08997 * 109.47426 * 59.99678 * 1 2 3 23 23 H 1.09006 * 109.46999 * 240.00039 * 2 1 3 24 24 H 1.08997 * 109.47426 * 120.00322 * 2 1 3 25 25 H 1.00899 * 110.99970 * 303.95982 * 3 2 1 26 26 H 1.08999 * 109.46992 * 60.00164 * 4 3 2 27 27 H 1.09000 * 109.47018 * 300.00723 * 4 3 2 28 28 H 1.07994 * 120.38479 * 0.02562 * 6 5 4 29 29 H 1.08001 * 120.82209 * 179.97438 * 7 6 5 30 30 H 0.97001 * 120.00205 * 359.73044 * 13 12 10 31 31 H 1.08003 * 119.66315 * 179.72160 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9524 2.8578 0.0000 6 6 4.2628 3.4734 1.1989 7 6 4.6883 4.7914 1.1922 8 6 4.7877 5.4484 -0.0320 9 8 5.1998 6.7407 -0.0887 10 6 5.6089 7.3039 1.0660 11 1 5.5225 6.7576 1.9937 12 6 6.1408 8.5844 1.0626 13 7 6.2457 9.2500 -0.0674 14 14 6.7006 9.3676 2.6634 15 1 7.2206 10.7318 2.3917 16 1 5.5519 9.4534 3.6007 17 1 7.7742 8.5404 3.2703 18 6 4.4534 4.7640 -1.1930 19 7 4.0571 3.5079 -1.1425 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6442 1.9013 -0.7813 26 1 3.8647 0.9204 -0.8908 27 1 3.8654 0.9200 0.8891 28 1 4.1743 2.9327 2.1295 29 1 4.9369 5.2972 2.1135 30 1 5.9546 8.8435 -0.8986 31 1 4.5224 5.2649 -2.1474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086790977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:08 Heat of formation + Delta-G solvation = -27.733047 kcal Electronic energy + Delta-G solvation = -14334.857392 eV Core-core repulsion = 11808.594114 eV Total energy + Delta-G solvation = -2526.263277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44844 -39.33621 -37.24919 -34.48302 -33.12769 -32.63164 -30.07222 -27.38754 -25.71278 -24.48171 -22.92344 -22.72931 -20.37679 -18.83533 -17.84940 -17.16090 -16.36922 -16.20455 -15.77067 -15.65757 -15.55297 -15.13403 -14.48786 -14.41782 -13.93310 -13.50114 -13.07086 -12.65520 -12.53727 -12.46629 -12.29845 -12.00379 -11.94313 -11.79377 -10.89343 -10.58541 -10.49077 -9.48475 -9.24452 -8.99539 -6.30861 0.26242 0.38699 1.49911 1.61599 1.79379 2.31855 2.70763 3.02301 3.08876 3.41144 3.60474 3.81918 3.96943 4.19411 4.26282 4.33432 4.41243 4.58358 4.68104 4.73622 4.85026 4.98548 5.08443 5.12802 5.25079 5.33833 5.44990 5.70059 6.05950 6.15005 6.35097 6.77497 7.03171 7.49370 8.44897 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059696 B = 0.005162 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.929675 B = 5422.587515 C = 5646.822664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.696 5.696 4 C 0.132 3.868 5 C 0.037 3.963 6 C -0.094 4.094 7 C -0.197 4.197 8 C 0.076 3.924 9 O -0.236 6.236 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.038 4.038 13 N -0.911 5.911 14 Si 1.145 2.855 15 H -0.274 1.274 16 H -0.259 1.259 17 H -0.259 1.259 18 C 0.020 3.980 19 N -0.447 5.447 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.033 0.967 24 H 0.081 0.919 25 H 0.339 0.661 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.160 0.840 29 H 0.137 0.863 30 H 0.263 0.737 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 -15.546 4.054 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.328 5.328 4 C 0.003 3.997 5 C -0.102 4.102 6 C -0.114 4.114 7 C -0.224 4.224 8 C 0.023 3.977 9 O -0.142 6.142 10 C -0.568 4.568 11 H 0.113 0.887 12 C -0.236 4.236 13 N -0.545 5.545 14 Si 0.960 3.040 15 H -0.199 1.199 16 H -0.183 1.183 17 H -0.183 1.183 18 C -0.139 4.139 19 N -0.157 5.157 20 H 0.095 0.905 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.157 0.843 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.178 0.822 29 H 0.155 0.845 30 H 0.071 0.929 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.904 -14.377 4.417 16.158 hybrid contribution -0.219 -0.830 -1.206 1.480 sum -6.123 -15.208 3.212 16.706 Atomic orbital electron populations 1.21748 0.94214 1.02537 1.01980 1.22012 0.96332 0.88171 1.01076 1.60597 1.06930 1.14852 1.50440 1.20556 0.88185 0.88832 1.02110 1.21206 1.02828 0.97915 0.88214 1.21957 0.95989 0.93305 1.00104 1.21785 1.06074 0.96706 0.97823 1.20778 0.95404 0.85337 0.96162 1.83657 1.73121 1.21261 1.36126 1.22649 1.45921 1.02791 0.85474 0.88729 1.28424 0.94360 0.92679 1.08122 1.70708 1.44149 1.39864 0.99763 0.82592 0.77642 0.75869 0.67906 1.19894 1.18329 1.18313 1.21868 1.04919 0.90829 0.96318 1.67316 1.11203 1.07007 1.30170 0.90460 0.92550 0.93168 0.94849 0.90106 0.84336 0.93851 0.87940 0.82225 0.84511 0.92865 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.17 71.98 0.73 -1.57 16 2 C 0.05 0.94 6.40 86.30 0.55 1.49 16 3 N -0.70 -16.71 6.49 -517.94 -3.36 -20.08 16 4 C 0.13 3.36 5.99 85.56 0.51 3.87 16 5 C 0.04 1.26 6.29 42.56 0.27 1.53 16 6 C -0.09 -3.23 9.71 22.34 0.22 -3.01 16 7 C -0.20 -8.40 9.27 22.59 0.21 -8.19 16 8 C 0.08 3.73 6.67 22.67 0.15 3.88 16 9 O -0.24 -13.63 9.17 -22.77 -0.21 -13.84 16 10 C -0.49 -27.92 9.50 67.92 0.65 -27.28 16 11 H 0.10 4.93 5.26 -2.91 -0.02 4.91 16 12 C -0.04 -2.15 5.49 84.83 0.47 -1.68 16 13 N -0.91 -55.73 13.70 21.62 0.30 -55.43 16 14 Si 1.14 46.44 29.92 68.60 2.05 48.49 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 C 0.02 0.89 11.15 84.84 0.95 1.83 16 19 N -0.45 -17.46 10.26 -183.35 -1.88 -19.34 16 20 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.34 8.81 8.72 -89.69 -0.78 8.03 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 2.14 8.04 -2.39 -0.02 2.12 16 28 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.14 5.76 5.76 -2.91 -0.02 5.74 16 30 H 0.26 16.72 7.97 -92.71 -0.74 15.98 16 31 H 0.15 6.36 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -66.39 272.23 1.98 -64.41 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.38 Total: 24.91 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.70 Total: -29.12 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -4.95 Total: -94.85 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.21 Total: -13.84 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.05 Total: 48.49 kcal Total: -66.39 1.98 -64.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086790977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.675 kcal (2) G-P(sol) polarization free energy of solvation -66.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds