Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.47215 * 2 1 4 4 N 1.46900 * 109.47385 * 240.00373 * 2 1 3 5 5 C 1.52998 * 109.47384 * 120.00264 * 2 1 3 6 6 C 1.50699 * 109.47580 * 185.00361 * 5 2 1 7 7 C 1.38288 * 119.54546 * 124.99418 * 6 5 2 8 8 C 1.38490 * 119.23597 * 180.02562 * 7 6 5 9 9 C 1.39294 * 118.36253 * 0.25325 * 8 7 6 10 10 O 1.35758 * 120.48479 * 179.72727 * 9 8 7 11 11 C 1.34822 * 117.00327 * 354.52996 * 10 9 8 12 12 H 1.07994 * 120.00237 * 5.05500 * 11 10 9 13 13 C 1.38663 * 120.00063 * 185.05790 * 11 10 9 14 14 N 1.31558 * 119.99940 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99923 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47294 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47301 * 119.99843 * 15 13 11 18 18 H 1.48506 * 109.46807 * 239.99904 * 15 13 11 19 19 C 1.38852 * 119.02366 * 359.50928 * 9 8 7 20 20 N 1.31810 * 120.66714 * 0.50115 * 19 9 8 21 21 H 1.09000 * 109.47367 * 299.99741 * 1 2 3 22 22 H 1.09003 * 109.47407 * 59.99931 * 1 2 3 23 23 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.00899 * 110.99722 * 299.99745 * 4 2 1 25 25 H 1.00904 * 111.00156 * 63.95185 * 4 2 1 26 26 H 1.08997 * 109.47503 * 64.99815 * 5 2 1 27 27 H 1.09002 * 109.47295 * 304.99791 * 5 2 1 28 28 H 1.07998 * 120.38265 * 0.02562 * 7 6 5 29 29 H 1.08000 * 120.82246 * 179.97438 * 8 7 6 30 30 H 0.96996 * 119.99884 * 180.02562 * 14 13 11 31 31 H 1.07995 * 119.66713 * 180.22834 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6149 1.3127 7 6 4.1412 -0.0931 2.4445 8 6 5.5219 0.0022 2.4958 9 6 6.2565 -0.4301 1.3941 10 8 7.6117 -0.3512 1.3960 11 6 8.1878 0.2609 2.4501 12 1 7.5817 0.5888 3.2816 13 6 9.5585 0.4697 2.4666 14 7 10.2970 0.0699 1.4538 15 14 10.3567 1.3171 3.9274 16 1 9.3155 1.6657 4.9271 17 1 11.3519 0.4048 4.5459 18 1 11.0374 2.5553 3.4701 19 6 5.5824 -0.9471 0.2958 20 7 4.2663 -1.0202 0.2880 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6962 -1.6478 -1.2228 25 1 1.7502 -0.1988 -2.0373 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2618 2.1370 28 1 3.5396 0.2363 3.2787 29 1 6.0167 0.4060 3.3667 30 1 11.2559 0.2156 1.4655 31 1 6.1418 -1.2887 -0.5625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086795366.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = -0.773979 kcal Electronic energy + Delta-G solvation = -14573.867002 eV Core-core repulsion = 12048.772757 eV Total energy + Delta-G solvation = -2525.094244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.50792 -37.41437 -35.94419 -32.38874 -31.25286 -30.44648 -28.62437 -26.52074 -24.96184 -22.64396 -21.45237 -20.26634 -17.97672 -17.03394 -15.97657 -15.60241 -14.75458 -14.48965 -14.37020 -13.82287 -13.48361 -13.24845 -13.01696 -12.64200 -12.26537 -12.12397 -11.72172 -11.58559 -11.44034 -11.07513 -10.73618 -10.67419 -10.49373 -9.64199 -8.94347 -8.71412 -8.51864 -8.13679 -7.25587 -6.48494 -4.07030 2.14423 2.37650 3.10793 3.11936 3.17406 3.93501 4.63751 4.76130 4.96027 5.06476 5.14769 5.26769 5.38688 5.44770 5.63600 5.69752 5.81347 5.94621 5.97118 6.01680 6.19941 6.35218 6.43996 6.75260 6.97377 7.14245 7.32421 7.50623 7.65250 7.78388 7.94736 8.95710 9.06958 9.65239 10.68946 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.063812 B = 0.005698 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.687056 B = 4913.106480 C = 5205.990477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.074 0.926 4 N -0.816 5.816 5 C -0.043 4.043 6 C 0.021 3.979 7 C -0.123 4.123 8 C -0.204 4.204 9 C 0.102 3.898 10 O -0.171 6.171 11 C -0.393 4.393 12 H 0.091 0.909 13 C 0.040 3.960 14 N -0.859 5.859 15 Si 0.942 3.058 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.026 3.974 20 N -0.398 5.398 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.335 0.665 25 H 0.329 0.671 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.270 0.730 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 0.448 0.403 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.016 4.016 3 H 0.092 0.908 4 N -0.344 5.344 5 C -0.081 4.081 6 C -0.116 4.116 7 C -0.143 4.143 8 C -0.231 4.231 9 C 0.046 3.954 10 O -0.073 6.073 11 C -0.470 4.470 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.493 5.493 15 Si 0.767 3.233 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.136 4.136 20 N -0.106 5.106 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.244 0.179 -0.233 13.247 hybrid contribution -0.162 0.792 1.402 1.619 sum -13.406 0.971 1.170 13.492 Atomic orbital electron populations 1.22723 0.98701 1.01598 1.01770 1.21321 0.90414 0.98472 0.91346 0.90752 1.58655 1.67371 1.05433 1.02925 1.20273 0.90851 1.00309 0.96679 1.20366 0.95029 1.04796 0.91436 1.21598 0.94557 0.99827 0.98285 1.21477 0.93880 1.07462 1.00242 1.20574 0.85727 0.94696 0.94408 1.83985 1.12945 1.66720 1.43619 1.21366 0.91320 1.37507 0.96771 0.89145 1.25304 0.95284 0.97203 0.98660 1.70046 1.06375 1.43161 1.29740 0.85634 0.79291 0.78788 0.79629 1.19125 1.20070 1.20072 1.21901 0.89613 1.04931 0.97176 1.67401 1.04984 1.12376 1.25880 0.92397 0.93074 0.92869 0.85251 0.85942 0.91666 0.91301 0.86938 0.85025 0.91955 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.48 37.15 0.35 -1.46 16 2 C 0.10 1.22 3.34 -67.72 -0.23 1.00 16 3 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 4 N -0.82 -10.67 7.81 -4.67 -0.04 -10.71 16 5 C -0.04 -0.60 5.29 -27.88 -0.15 -0.75 16 6 C 0.02 0.39 6.18 -82.55 -0.51 -0.12 16 7 C -0.12 -2.32 9.70 -39.47 -0.38 -2.70 16 8 C -0.20 -4.51 9.27 -39.10 -0.36 -4.87 16 9 C 0.10 2.52 6.67 -38.96 -0.26 2.26 16 10 O -0.17 -4.89 9.77 0.05 0.00 -4.89 16 11 C -0.39 -10.97 9.50 30.89 0.29 -10.68 16 12 H 0.09 2.34 5.26 -52.49 -0.28 2.06 16 13 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 14 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 15 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 C 0.03 0.59 11.15 -17.33 -0.19 0.40 16 20 N -0.40 -8.18 8.81 -9.31 -0.08 -8.27 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.33 4.01 9.00 -39.29 -0.35 3.66 16 25 H 0.33 3.70 9.07 -39.29 -0.36 3.35 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 28 H 0.11 1.75 7.94 -52.49 -0.42 1.33 16 29 H 0.13 2.85 5.76 -52.49 -0.30 2.55 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.15 3.17 8.06 -52.49 -0.42 2.74 16 LS Contribution 268.97 15.07 4.05 4.05 Total: -1.00 -30.77 268.97 -5.65 -36.41 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.79 Total: 8.25 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.53 Total: -15.91 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.64 Total: -43.29 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.00 Total: -4.89 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.77 -5.65 -36.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086795366.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.639 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds