Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38698 * 125.98197 * 2 1 4 4 C 1.32863 * 107.91518 * 179.69317 * 3 2 1 5 5 N 1.38694 * 107.91241 * 0.43420 * 4 3 2 6 6 C 1.46504 * 125.98128 * 179.83078 * 5 4 3 7 7 C 1.52999 * 109.46707 * 274.94692 * 6 5 4 8 8 C 1.50700 * 115.55026 * 294.77233 * 7 6 5 9 9 H 1.08007 * 119.99837 * 97.57050 * 8 7 6 10 10 C 1.37874 * 120.00326 * 277.56544 * 8 7 6 11 11 N 1.31520 * 119.99839 * 173.85559 * 10 8 7 12 12 Si 1.86800 * 119.99905 * 353.86241 * 10 8 7 13 13 H 1.48496 * 109.46854 * 275.10311 * 12 10 8 14 14 H 1.48500 * 109.47255 * 35.10462 * 12 10 8 15 15 H 1.48507 * 109.46944 * 155.10238 * 12 10 8 16 16 C 1.52997 * 117.51733 * 80.47692 * 7 6 5 17 17 C 1.52998 * 60.00040 * 107.48254 * 16 7 6 18 18 C 1.34756 * 125.98749 * 179.97438 * 2 1 3 19 19 O 1.21798 * 125.94359 * 0.05629 * 18 2 1 20 20 H 1.08998 * 109.46675 * 270.03650 * 1 2 3 21 21 H 1.08997 * 109.47391 * 30.04017 * 1 2 3 22 22 H 1.09004 * 109.46852 * 150.04001 * 1 2 3 23 23 H 1.07999 * 126.04189 * 359.97438 * 3 2 1 24 24 H 1.07999 * 126.04577 * 180.28422 * 4 3 2 25 25 H 1.08999 * 109.46712 * 154.95497 * 6 5 4 26 26 H 1.08997 * 109.47168 * 34.94893 * 6 5 4 27 27 H 0.96999 * 119.99350 * 180.02562 * 11 10 8 28 28 H 1.09006 * 117.49906 * 214.97087 * 16 7 6 29 29 H 1.09001 * 117.50016 * 359.97438 * 16 7 6 30 30 H 1.09004 * 117.49309 * 252.51215 * 17 16 7 31 31 H 1.08999 * 117.50259 * 107.48945 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2799 1.1223 0.0000 4 6 3.5430 0.7103 0.0068 5 7 3.5393 -0.6766 0.0011 6 6 4.7226 -1.5405 0.0020 7 6 5.2131 -1.7349 -1.4341 8 6 4.2732 -2.4796 -2.3468 9 1 3.6193 -1.9335 -3.0107 10 6 4.2480 -3.8581 -2.3345 11 7 3.3465 -4.5056 -3.0400 12 14 5.4943 -4.8059 -1.3158 13 1 6.7458 -4.9753 -2.0969 14 1 5.7872 -4.0555 -0.0682 15 1 4.9406 -6.1404 -0.9724 16 6 6.0586 -0.6181 -2.0496 17 6 6.7143 -1.9403 -1.6462 18 6 2.2569 -1.0904 0.0005 19 8 1.8791 -2.2483 0.0000 20 1 -0.3632 0.0007 1.0277 21 1 -0.3634 0.8896 -0.5144 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9466 2.1496 -0.0004 24 1 4.4180 1.3434 0.0129 25 1 4.4653 -2.5084 0.4322 26 1 5.5105 -1.0769 0.5955 27 1 3.3286 -5.4754 -3.0310 28 1 5.9350 -0.4219 -3.1147 29 1 6.2652 0.2556 -1.4315 30 1 7.3526 -1.9364 -0.7626 31 1 7.0221 -2.6140 -2.4458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 29.109492 kcal Electronic energy + Delta-G solvation = -15621.647550 eV Core-core repulsion = 13097.849150 eV Total energy + Delta-G solvation = -2523.798400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.91884 -38.83773 -37.59988 -35.54547 -34.20349 -31.04319 -28.39548 -27.89153 -26.56778 -23.26322 -22.54801 -21.68191 -20.74331 -18.73766 -17.81867 -17.20927 -16.80664 -16.42502 -15.78815 -15.46099 -15.04681 -14.84081 -14.60027 -14.04447 -13.95804 -13.51616 -13.20399 -13.05777 -12.64127 -12.46049 -12.13372 -11.99122 -11.68202 -11.24165 -10.97975 -10.69030 -10.39774 -10.29073 -8.42393 -8.27422 -6.31389 1.29427 1.35287 1.43616 1.52951 1.64472 2.16552 2.37501 2.85407 3.11383 3.31740 3.97775 4.13579 4.25543 4.37215 4.43934 4.51941 4.54284 4.61030 4.76952 4.85320 4.88193 4.91621 5.08758 5.28076 5.47523 5.54000 5.72209 5.72849 6.21796 6.28656 6.71926 6.80851 7.36960 7.59144 8.90668 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.012070 C = 0.009875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.490992 B = 2319.257062 C = 2834.749332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.547 5.547 3 C -0.025 4.025 4 C -0.016 4.016 5 N -0.518 5.518 6 C 0.167 3.833 7 C -0.053 4.053 8 C -0.470 4.470 9 H 0.007 0.993 10 C 0.015 3.985 11 N -0.954 5.954 12 Si 0.944 3.056 13 H -0.256 1.256 14 H -0.231 1.231 15 H -0.309 1.309 16 C -0.146 4.146 17 C -0.187 4.187 18 C 0.618 3.382 19 O -0.628 6.628 20 H 0.080 0.920 21 H 0.118 0.882 22 H 0.048 0.952 23 H 0.227 0.773 24 H 0.217 0.783 25 H 0.048 0.952 26 H 0.116 0.884 27 H 0.259 0.741 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 15.546 9.290 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.268 5.268 3 C -0.146 4.146 4 C -0.139 4.139 5 N -0.235 5.235 6 C 0.045 3.955 7 C -0.055 4.055 8 C -0.507 4.507 9 H 0.026 0.974 10 C -0.181 4.181 11 N -0.594 5.594 12 Si 0.768 3.232 13 H -0.181 1.181 14 H -0.154 1.154 15 H -0.237 1.237 16 C -0.183 4.183 17 C -0.224 4.224 18 C 0.320 3.680 19 O -0.510 6.510 20 H 0.099 0.901 21 H 0.137 0.863 22 H 0.067 0.933 23 H 0.243 0.757 24 H 0.233 0.767 25 H 0.066 0.934 26 H 0.134 0.866 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.713 14.547 9.245 17.448 hybrid contribution -0.236 -1.349 -0.354 1.414 sum 2.478 13.198 8.891 16.105 Atomic orbital electron populations 1.21828 0.74540 1.04164 1.03574 1.45413 1.08078 1.06309 1.66971 1.22467 0.88022 0.93436 1.10697 1.22511 1.00152 0.82049 1.09171 1.45255 1.05632 1.07839 1.64769 1.21308 0.84718 0.92919 0.96536 1.19629 0.90332 1.02055 0.93441 1.20193 1.19693 0.90634 1.20219 0.97438 1.25911 0.97170 0.98958 0.96079 1.70097 1.36680 1.08008 1.44645 0.85851 0.79169 0.76905 0.81270 1.18103 1.15352 1.23730 1.22824 1.03059 0.91947 1.00508 1.23079 0.95201 1.00899 1.03265 1.16746 0.82762 0.84923 0.83574 1.90976 1.78451 1.19170 1.62408 0.90107 0.86349 0.93300 0.75671 0.76667 0.93385 0.86608 0.93203 0.91206 0.86077 0.86713 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.65 11.07 127.77 1.41 4.07 16 2 N -0.55 -18.93 3.18 -679.74 -2.16 -21.09 16 3 C -0.02 -0.60 11.49 82.43 0.95 0.35 16 4 C -0.02 -0.44 11.49 82.43 0.95 0.51 16 5 N -0.52 -20.70 2.68 -656.20 -1.76 -22.46 16 6 C 0.17 6.79 5.55 86.38 0.48 7.27 16 7 C -0.05 -2.38 1.03 -52.93 -0.05 -2.43 16 8 C -0.47 -28.50 9.28 25.60 0.24 -28.26 16 9 H 0.01 0.52 8.06 -2.91 -0.02 0.49 16 10 C 0.02 0.97 5.47 84.65 0.46 1.43 16 11 N -0.95 -65.99 13.96 21.45 0.30 -65.69 16 12 Si 0.94 47.83 24.82 68.60 1.70 49.53 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.23 -10.36 5.95 99.48 0.59 -9.77 16 15 H -0.31 -16.28 7.11 99.48 0.71 -15.58 16 16 C -0.15 -5.15 9.96 30.59 0.30 -4.84 16 17 C -0.19 -6.96 7.64 30.59 0.23 -6.73 16 18 C 0.62 29.29 8.48 179.07 1.52 30.81 16 19 O -0.63 -37.82 17.57 -4.66 -0.08 -37.90 16 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 23 H 0.23 2.77 8.06 -2.91 -0.02 2.74 16 24 H 0.22 3.53 8.06 -2.91 -0.02 3.50 16 25 H 0.05 2.29 6.54 -2.39 -0.02 2.28 16 26 H 0.12 3.41 8.09 -2.39 -0.02 3.39 16 27 H 0.26 16.97 8.31 -92.71 -0.77 16.20 16 28 H 0.07 2.67 8.14 -2.38 -0.02 2.66 16 29 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 31 H 0.07 2.95 7.29 -2.39 -0.02 2.94 16 Total: -1.00 -91.46 267.00 5.49 -85.97 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.00 Total: 9.46 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 6.49 Total: 2.17 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -3.62 Total: -109.24 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.08 Total: -37.90 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.70 Total: 49.53 kcal Total: -91.46 5.49 -85.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.084 kcal (2) G-P(sol) polarization free energy of solvation -91.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds