Wall clock time and date at job start Mon Mar 30 2020 02:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46604 * 2 1 4 4 C 1.50703 * 109.46873 * 240.00351 * 2 1 3 5 5 H 1.08003 * 119.99304 * 239.99433 * 4 2 1 6 6 C 1.37869 * 120.00076 * 59.99692 * 4 2 1 7 7 N 1.31514 * 120.00471 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46873 * 90.00087 * 8 6 4 10 10 H 1.48491 * 109.47188 * 209.99984 * 8 6 4 11 11 H 1.48503 * 109.46982 * 330.00425 * 8 6 4 12 12 N 1.46500 * 109.47474 * 120.00103 * 2 1 3 13 13 C 1.46491 * 120.00024 * 59.44604 * 12 2 1 14 14 C 1.34772 * 119.99968 * 239.45146 * 12 2 1 15 15 O 1.21282 * 120.00137 * 175.87052 * 14 12 2 16 16 C 1.50706 * 119.99869 * 356.14586 * 14 12 2 17 17 C 1.47196 * 115.55174 * 66.61992 * 16 14 12 18 18 N 3.63174 * 87.25451 * 29.19384 * 2 1 3 19 19 C 1.52995 * 117.49784 * 280.94425 * 16 14 12 20 20 C 1.53002 * 117.49494 * 212.28556 * 16 14 12 21 21 H 1.08997 * 109.47212 * 299.99555 * 1 2 3 22 22 H 1.09002 * 109.47251 * 59.99876 * 1 2 3 23 23 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00056 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47546 * 273.47708 * 13 12 2 26 26 H 1.09008 * 109.47106 * 33.47107 * 13 12 2 27 27 H 1.09006 * 109.47388 * 153.47058 * 13 12 2 28 28 H 1.09002 * 117.50002 * 0.02562 * 19 16 14 29 29 H 1.09003 * 117.49801 * 145.02520 * 19 16 14 30 30 H 1.09008 * 117.49828 * 214.97860 * 20 16 14 31 31 H 1.08997 * 117.50331 * 359.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.3446 -2.1615 -4.4124 10 1 2.4870 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 1.6546 -2.0895 1.4341 14 6 2.8024 -0.0389 2.0776 15 8 3.1452 -0.5859 3.1044 16 6 3.2479 1.3719 1.7904 17 6 2.1801 2.3849 1.7786 18 7 1.3560 3.1668 1.7694 19 6 4.4115 1.5604 0.8150 20 6 4.6212 1.7990 2.3124 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7088 1.1614 -3.4844 25 1 0.6986 -2.1327 1.9560 26 1 1.5716 -2.6107 0.4803 27 1 2.4228 -2.5663 2.0430 28 1 4.8545 0.6642 0.3807 29 1 4.3864 2.4349 0.1648 30 1 4.7341 2.8304 2.6467 31 1 5.2022 1.0599 2.8639 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087671756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:04 Heat of formation + Delta-G solvation = 22.152082 kcal Electronic energy + Delta-G solvation = -15494.306991 eV Core-core repulsion = 12970.206895 eV Total energy + Delta-G solvation = -2524.100096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87792 -36.91777 -35.77370 -34.96230 -32.72221 -29.25434 -27.33236 -25.36455 -24.20686 -22.31206 -21.63919 -19.67331 -17.28822 -16.63378 -15.78896 -15.36709 -14.71024 -14.37883 -13.91580 -13.36990 -13.18991 -12.67887 -12.50367 -12.35806 -12.15530 -11.73647 -11.42883 -11.40194 -11.11975 -10.94624 -10.81939 -10.62780 -10.37186 -10.27318 -10.05563 -9.45604 -9.19796 -8.58884 -7.77630 -6.21143 -4.31310 2.75281 2.91583 3.18574 3.20122 3.27104 3.29371 3.70124 4.12268 4.22171 4.27305 4.90613 5.00949 5.09554 5.14436 5.71046 5.77062 6.05227 6.08165 6.16000 6.24739 6.41265 6.51625 6.70561 6.87080 7.09881 7.32046 7.59893 7.78061 7.88494 8.04865 8.28654 8.64621 8.82349 9.36862 10.83408 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.010631 C = 0.010042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.812478 B = 2633.064854 C = 2787.599108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.253 3.747 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.580 5.580 13 C 0.092 3.908 14 C 0.551 3.449 15 O -0.558 6.558 16 C -0.072 4.072 17 C 0.251 3.749 18 N -0.420 5.420 19 C -0.118 4.118 20 C -0.128 4.128 21 H 0.010 0.990 22 H 0.095 0.905 23 H 0.034 0.966 24 H 0.265 0.735 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -0.793 4.072 6.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.152 3.848 3 H 0.073 0.927 4 C -0.569 4.569 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.309 5.309 13 C -0.051 4.051 14 C 0.336 3.664 15 O -0.438 6.438 16 C -0.079 4.079 17 C -0.066 4.066 18 N -0.095 5.095 19 C -0.156 4.156 20 C -0.167 4.167 21 H 0.029 0.971 22 H 0.114 0.886 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.403 0.212 4.415 6.238 hybrid contribution 0.259 -0.726 -1.074 1.322 sum 4.662 -0.514 3.341 5.758 Atomic orbital electron populations 1.22104 0.97906 0.99941 1.00919 1.19145 0.91555 0.93378 0.80730 0.92724 1.21279 1.32356 1.13396 0.89890 0.91741 1.24895 0.94713 0.94858 0.99042 1.69875 1.35882 1.22431 1.24075 0.86492 0.79337 0.79372 0.82239 1.20557 1.21087 1.19707 1.48243 1.46738 1.12350 1.23556 1.21492 0.99439 0.82263 1.01905 1.18836 0.79143 0.85134 0.83312 1.90628 1.58638 1.68425 1.26145 1.18125 0.86827 0.90497 1.12459 1.27100 0.93402 0.93121 0.92970 1.81182 1.08673 1.10455 1.09171 1.23207 0.94861 1.05217 0.92361 1.23214 0.92566 1.03350 0.97523 0.97125 0.88630 0.94644 0.92476 0.93791 0.90241 0.91732 0.86233 0.87075 0.87525 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.96 37.16 0.33 -3.19 16 2 C 0.25 5.85 2.29 -69.08 -0.16 5.69 16 3 H 0.06 1.34 4.73 -51.93 -0.25 1.09 16 4 C -0.53 -13.04 8.02 -34.44 -0.28 -13.31 16 5 H 0.06 1.57 7.31 -52.48 -0.38 1.18 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.39 11.32 55.43 0.63 -22.76 16 8 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 N -0.58 -12.13 2.75 -175.26 -0.48 -12.61 16 13 C 0.09 1.70 9.45 59.84 0.57 2.26 16 14 C 0.55 11.10 6.91 -10.98 -0.08 11.03 16 15 O -0.56 -11.92 16.30 5.56 0.09 -11.83 16 16 C -0.07 -1.27 1.29 -158.45 -0.20 -1.47 16 17 C 0.25 4.90 13.14 -20.76 -0.27 4.63 16 18 N -0.42 -8.81 18.54 42.15 0.78 -8.03 16 19 C -0.12 -1.72 9.65 -26.70 -0.26 -1.97 16 20 C -0.13 -1.67 9.74 -26.69 -0.26 -1.93 16 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 23 H 0.03 0.78 7.66 -51.93 -0.40 0.38 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.45 7.02 -51.92 -0.36 1.09 16 27 H 0.06 1.13 7.38 -51.93 -0.38 0.74 16 28 H 0.12 1.73 8.14 -51.93 -0.42 1.30 16 29 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.11 1.16 8.14 -51.92 -0.42 0.73 16 31 H 0.12 1.45 8.02 -51.93 -0.42 1.04 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -28.54 271.73 -4.37 -32.91 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.75 Total: 0.27 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.70 Total: 3.35 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.93 Total: -43.41 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.54 -4.37 -32.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087671756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.061 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds