Wall clock time and date at job start Mon Mar 30 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46604 * 2 1 4 4 C 1.50703 * 109.46873 * 240.00351 * 2 1 3 5 5 H 1.08003 * 119.99304 * 239.99433 * 4 2 1 6 6 C 1.37869 * 120.00076 * 59.99692 * 4 2 1 7 7 N 1.31514 * 120.00471 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46873 * 90.00087 * 8 6 4 10 10 H 1.48491 * 109.47188 * 209.99984 * 8 6 4 11 11 H 1.48503 * 109.46982 * 330.00425 * 8 6 4 12 12 N 1.46500 * 109.47474 * 120.00103 * 2 1 3 13 13 C 1.46491 * 120.00024 * 59.44604 * 12 2 1 14 14 C 1.34772 * 119.99968 * 239.45146 * 12 2 1 15 15 O 1.21282 * 120.00137 * 175.87052 * 14 12 2 16 16 C 1.50706 * 119.99869 * 356.14586 * 14 12 2 17 17 C 1.47196 * 115.55174 * 66.61992 * 16 14 12 18 18 N 3.63174 * 87.25451 * 29.19384 * 2 1 3 19 19 C 1.52995 * 117.49784 * 280.94425 * 16 14 12 20 20 C 1.53002 * 117.49494 * 212.28556 * 16 14 12 21 21 H 1.08997 * 109.47212 * 299.99555 * 1 2 3 22 22 H 1.09002 * 109.47251 * 59.99876 * 1 2 3 23 23 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00056 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47546 * 273.47708 * 13 12 2 26 26 H 1.09008 * 109.47106 * 33.47107 * 13 12 2 27 27 H 1.09006 * 109.47388 * 153.47058 * 13 12 2 28 28 H 1.09002 * 117.50002 * 0.02562 * 19 16 14 29 29 H 1.09003 * 117.49801 * 145.02520 * 19 16 14 30 30 H 1.09008 * 117.49828 * 214.97860 * 20 16 14 31 31 H 1.08997 * 117.50331 * 359.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.3446 -2.1615 -4.4124 10 1 2.4870 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 1.6546 -2.0895 1.4341 14 6 2.8024 -0.0389 2.0776 15 8 3.1452 -0.5859 3.1044 16 6 3.2479 1.3719 1.7904 17 6 2.1801 2.3849 1.7786 18 7 1.3560 3.1668 1.7694 19 6 4.4115 1.5604 0.8150 20 6 4.6212 1.7990 2.3124 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7088 1.1614 -3.4844 25 1 0.6986 -2.1327 1.9560 26 1 1.5716 -2.6107 0.4803 27 1 2.4228 -2.5663 2.0430 28 1 4.8545 0.6642 0.3807 29 1 4.3864 2.4349 0.1648 30 1 4.7341 2.8304 2.6467 31 1 5.2022 1.0599 2.8639 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087671756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:03 Heat of formation + Delta-G solvation = 5.613736 kcal Electronic energy + Delta-G solvation = -15495.024147 eV Core-core repulsion = 12970.206895 eV Total energy + Delta-G solvation = -2524.817252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.37923 -38.36423 -37.47492 -36.43165 -34.56599 -31.07915 -28.81082 -27.30272 -25.62468 -23.46789 -23.33452 -21.24260 -18.87397 -18.46153 -17.24128 -17.02905 -16.34797 -15.96211 -15.34965 -14.92221 -14.78364 -14.39325 -14.02051 -13.83315 -13.79859 -13.49975 -13.06399 -12.86675 -12.71554 -12.58109 -12.43432 -12.22197 -12.07679 -11.83797 -11.39799 -11.25322 -10.81061 -10.50508 -9.45861 -8.12494 -6.28402 1.26183 1.45768 1.48275 1.49791 1.57950 1.68255 2.20862 2.46507 2.76363 2.90983 3.17175 3.48528 3.76244 3.87366 4.50464 4.61447 4.67848 4.70567 4.73457 4.82888 4.97779 4.98357 5.01096 5.19004 5.31065 5.50031 5.70782 5.89167 6.16153 6.37915 6.57621 6.81031 7.16372 7.44082 8.91180 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.010631 C = 0.010042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.812478 B = 2633.064854 C = 2787.599108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.260 3.740 3 H 0.043 0.957 4 C -0.534 4.534 5 H 0.066 0.934 6 C 0.027 3.973 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.589 5.589 13 C 0.090 3.910 14 C 0.550 3.450 15 O -0.572 6.572 16 C -0.110 4.110 17 C 0.265 3.735 18 N -0.458 5.458 19 C -0.112 4.112 20 C -0.091 4.091 21 H 0.008 0.992 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.264 0.736 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -1.291 4.167 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.061 0.939 4 C -0.572 4.572 5 H 0.084 0.916 6 C -0.174 4.174 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.318 5.318 13 C -0.052 4.052 14 C 0.336 3.664 15 O -0.453 6.453 16 C -0.116 4.116 17 C -0.052 4.052 18 N -0.134 5.134 19 C -0.150 4.150 20 C -0.129 4.129 21 H 0.027 0.973 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.152 0.848 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.903 -0.299 4.526 7.444 hybrid contribution -0.203 -0.602 -1.060 1.235 sum 5.700 -0.901 3.466 6.732 Atomic orbital electron populations 1.21971 0.98471 0.99902 0.99612 1.18873 0.90984 0.92953 0.81318 0.93935 1.21483 1.31986 1.13268 0.90473 0.91612 1.25565 0.94867 0.95374 1.01575 1.69998 1.37057 1.23763 1.24469 0.85568 0.79024 0.78156 0.78971 1.20571 1.21332 1.18818 1.48266 1.47154 1.13204 1.23173 1.21590 1.00195 0.81277 1.02183 1.19174 0.78485 0.86004 0.82745 1.90610 1.59024 1.69203 1.26435 1.18329 0.87897 0.88676 1.16746 1.27488 0.93123 0.92820 0.91751 1.81180 1.09567 1.11832 1.10829 1.23333 0.92472 1.05614 0.93595 1.23442 0.88115 1.05135 0.96182 0.97294 0.90957 0.93969 0.92662 0.93027 0.90257 0.90722 0.86137 0.86277 0.84781 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.63 8.96 71.98 0.65 -5.99 16 2 C 0.26 11.94 2.29 44.25 0.10 12.04 16 3 H 0.04 2.08 4.73 -2.39 -0.01 2.07 16 4 C -0.53 -25.75 8.02 25.60 0.21 -25.55 16 5 H 0.07 3.11 7.31 -2.91 -0.02 3.09 16 6 C 0.03 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -48.39 11.32 21.44 0.24 -48.15 16 8 Si 0.96 39.59 29.54 68.60 2.03 41.61 16 9 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 12 N -0.59 -24.06 2.75 -826.79 -2.28 -26.34 16 13 C 0.09 3.20 9.45 127.77 1.21 4.41 16 14 C 0.55 21.42 6.91 87.66 0.61 22.02 16 15 O -0.57 -23.45 16.30 -3.03 -0.05 -23.50 16 16 C -0.11 -3.67 1.29 -54.73 -0.07 -3.74 16 17 C 0.26 10.14 13.14 89.44 1.18 11.32 16 18 N -0.46 -19.26 18.54 20.00 0.37 -18.88 16 19 C -0.11 -3.00 9.65 30.62 0.30 -2.70 16 20 C -0.09 -2.07 9.74 30.62 0.30 -1.77 16 21 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 22 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 23 H 0.04 1.86 7.66 -2.39 -0.02 1.84 16 24 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.80 7.02 -2.38 -0.02 2.78 16 27 H 0.07 2.49 7.38 -2.38 -0.02 2.47 16 28 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.13 2.72 8.02 -2.39 -0.02 2.70 16 Total: -1.00 -59.62 271.73 6.36 -53.26 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.13 Total: 10.18 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 4.91 Total: 11.83 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -1.66 Total: -93.37 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.61 kcal Total: -59.62 6.36 -53.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087671756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.875 kcal (2) G-P(sol) polarization free energy of solvation -59.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds