Wall clock time and date at job start Mon Mar 30 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47089 * 2 1 4 4 C 1.35674 * 117.00138 * 180.02562 * 3 2 1 5 5 C 1.38917 * 119.68306 * 180.02562 * 4 3 2 6 6 C 1.38384 * 119.10757 * 179.76850 * 5 4 3 7 7 C 1.38824 * 118.48525 * 0.45212 * 6 5 4 8 8 C 1.50706 * 120.35629 * 179.80357 * 7 6 5 9 9 H 1.09001 * 109.46953 * 339.72061 * 8 7 6 10 10 N 1.46899 * 109.47101 * 219.71893 * 8 7 6 11 11 C 1.50698 * 109.47294 * 99.71503 * 8 7 6 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.38049 * 119.29099 * 359.52252 * 7 6 5 20 20 N 1.31966 * 120.83489 * 0.25579 * 19 7 6 21 21 H 1.09004 * 109.47069 * 299.99590 * 1 2 3 22 22 H 1.09004 * 109.47618 * 59.99572 * 1 2 3 23 23 H 1.09007 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47069 * 240.00410 * 2 1 3 25 25 H 1.09001 * 109.47114 * 120.00474 * 2 1 3 26 26 H 1.07995 * 120.44908 * 0.02562 * 5 4 3 27 27 H 1.08006 * 120.75456 * 180.25190 * 6 5 4 28 28 H 1.00897 * 110.99782 * 299.99861 * 10 8 7 29 29 H 1.00903 * 110.99644 * 63.95378 * 10 8 7 30 30 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 31 31 H 1.07998 * 119.58415 * 180.27598 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 -0.0005 5 6 3.8752 2.8117 0.0000 6 6 5.2488 2.9793 0.0043 7 6 6.0538 1.8483 -0.0017 8 6 7.5549 1.9819 -0.0017 9 1 7.8312 2.9760 -0.3532 10 7 8.1367 0.9685 -0.8920 11 6 8.0773 1.7807 1.3975 12 1 7.3909 1.5761 2.2059 13 6 9.4314 1.8568 1.6454 14 7 10.2672 2.1054 0.6609 15 14 10.0789 1.6067 3.3796 16 1 11.5581 1.7385 3.3796 17 1 9.7022 0.2523 3.8582 18 1 9.4912 2.6310 4.2800 19 6 5.4646 0.5999 -0.0016 20 7 4.1511 0.4718 -0.0010 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.2193 3.6697 0.0012 27 1 5.6846 3.9675 0.0089 28 1 7.8947 0.0377 -0.5871 29 1 7.8525 1.1213 -1.8481 30 1 9.9310 2.2349 -0.2397 31 1 6.0863 -0.2832 -0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104488574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:29 Heat of formation + Delta-G solvation = -12.109966 kcal Electronic energy + Delta-G solvation = -14708.765520 eV Core-core repulsion = 12183.179710 eV Total energy + Delta-G solvation = -2525.585810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.22668 -37.94247 -34.99555 -32.06647 -31.92892 -31.15068 -28.79061 -25.64139 -24.02752 -23.21959 -21.93577 -20.66733 -18.21642 -16.95018 -16.45468 -16.09431 -14.90228 -14.51780 -14.26264 -13.74952 -13.71517 -13.60844 -13.03624 -12.54603 -12.49333 -12.13862 -12.00993 -11.53156 -11.21888 -10.73947 -10.59735 -10.51314 -10.05674 -9.47351 -9.18561 -8.81316 -8.36394 -7.81875 -7.51280 -6.21779 -4.06044 1.60727 1.80752 3.26534 3.47185 3.48127 3.66955 4.24769 4.59083 4.70922 4.97898 5.03895 5.28369 5.36237 5.44954 5.49649 5.57678 5.64551 5.78418 5.89774 5.96505 6.01971 6.07976 6.48667 6.71491 6.91295 7.15727 7.58941 7.91212 8.21366 8.28808 8.59474 8.69484 9.01035 9.77682 11.17949 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.006266 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.289116 B = 4467.565165 C = 4627.435093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.068 3.932 3 O -0.315 6.315 4 C 0.290 3.710 5 C -0.190 4.190 6 C -0.047 4.047 7 C -0.149 4.149 8 C 0.246 3.754 9 H 0.040 0.960 10 N -0.829 5.829 11 C -0.611 4.611 12 H 0.045 0.955 13 C 0.040 3.960 14 N -0.888 5.888 15 Si 1.064 2.936 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.129 3.871 20 N -0.540 5.540 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.326 0.674 29 H 0.303 0.697 30 H 0.290 0.710 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 -1.899 -2.227 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.224 6.224 4 C 0.111 3.889 5 C -0.210 4.210 6 C -0.074 4.074 7 C -0.154 4.154 8 C 0.136 3.864 9 H 0.058 0.942 10 N -0.357 5.357 11 C -0.649 4.649 12 H 0.064 0.936 13 C -0.170 4.170 14 N -0.522 5.522 15 Si 0.893 3.107 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.217 1.217 19 C -0.026 4.026 20 N -0.263 5.263 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.150 0.850 27 H 0.154 0.846 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.503 -2.290 -1.120 12.760 hybrid contribution -2.101 0.304 -0.989 2.342 sum -14.604 -1.986 -2.109 14.888 Atomic orbital electron populations 1.21808 0.93502 1.02541 1.03037 1.22473 0.94211 0.81822 1.02261 1.86166 1.17511 1.29895 1.88803 1.19652 0.83531 0.90207 0.95518 1.20977 0.95811 0.95273 1.08967 1.21366 0.91651 0.99694 0.94653 1.22341 1.01807 0.93036 0.98178 1.18255 0.81291 0.92597 0.94245 0.94240 1.59446 1.66453 1.06224 1.03556 1.21671 0.94701 1.57337 0.91235 0.93629 1.25625 0.93169 0.93306 1.04942 1.70561 1.38095 1.40510 1.03045 0.83641 0.76183 0.76363 0.74540 1.20836 1.21608 1.21687 1.22130 0.88264 0.97532 0.94691 1.67240 1.06786 1.33118 1.19138 0.91818 0.91878 0.90601 0.92045 0.91950 0.85024 0.84596 0.86081 0.88650 0.89753 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.07 0.90 6.03 37.16 0.22 1.12 16 3 O -0.32 -5.11 10.12 -18.72 -0.19 -5.30 16 4 C 0.29 5.25 7.49 -17.12 -0.13 5.13 16 5 C -0.19 -3.26 10.04 -39.28 -0.39 -3.66 16 6 C -0.05 -0.88 9.81 -39.31 -0.39 -1.27 16 7 C -0.15 -3.08 4.90 -104.47 -0.51 -3.60 16 8 C 0.25 5.82 2.48 -70.01 -0.17 5.64 16 9 H 0.04 1.00 7.90 -51.93 -0.41 0.59 16 10 N -0.83 -18.24 7.62 -6.65 -0.05 -18.29 16 11 C -0.61 -16.56 8.71 -34.44 -0.30 -16.86 16 12 H 0.05 1.27 7.74 -52.48 -0.41 0.86 16 13 C 0.04 1.11 5.39 -17.82 -0.10 1.01 16 14 N -0.89 -26.21 13.50 55.43 0.75 -25.46 16 15 Si 1.06 24.92 29.90 -169.99 -5.08 19.83 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 C 0.13 2.54 10.45 -17.56 -0.18 2.36 16 20 N -0.54 -10.27 9.22 -13.33 -0.12 -10.40 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 25 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 26 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 28 H 0.33 6.88 7.36 -39.29 -0.29 6.59 16 29 H 0.30 5.87 9.06 -39.29 -0.36 5.52 16 30 H 0.29 8.51 6.39 -40.82 -0.26 8.25 16 31 H 0.15 2.86 6.67 -52.49 -0.35 2.51 16 LS Contribution 269.14 15.07 4.06 4.06 Total: -1.00 -30.30 269.14 -6.03 -36.34 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -3.82 Total: 10.41 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.57 Total: -11.19 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.58 Total: -54.15 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.19 Total: -5.30 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.30 -6.03 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104488574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.225 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds