Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46865 * 2 1 4 4 C 1.35682 * 117.00061 * 179.97438 * 3 2 1 5 5 N 1.32276 * 119.68034 * 0.02562 * 4 3 2 6 6 C 1.31941 * 121.64483 * 179.97438 * 5 4 3 7 7 C 1.38095 * 120.83019 * 359.97438 * 6 5 4 8 8 C 1.38782 * 119.28760 * 359.97438 * 7 6 5 9 9 C 1.38420 * 118.48952 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.44227 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46831 * 144.99885 * 10 9 8 12 12 N 1.46898 * 109.47280 * 25.00625 * 10 9 8 13 13 C 1.50696 * 109.47487 * 264.99933 * 10 9 8 14 14 H 1.08000 * 120.00118 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00076 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00111 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99933 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47327 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47476 * 119.99890 * 17 15 13 20 20 H 1.48505 * 109.47145 * 239.99762 * 17 15 13 21 21 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47303 * 299.99393 * 1 2 3 23 23 H 1.08997 * 109.47127 * 60.00073 * 1 2 3 24 24 H 1.08994 * 109.47457 * 240.00324 * 2 1 3 25 25 H 1.09002 * 109.47535 * 120.00142 * 2 1 3 26 26 H 1.07993 * 119.58485 * 180.27256 * 6 5 4 27 27 H 1.07998 * 120.35195 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.75199 * 179.97438 * 8 7 6 29 29 H 1.00897 * 111.00104 * 176.04399 * 12 10 9 30 30 H 1.00908 * 110.99659 * 299.99241 * 12 10 9 31 31 H 0.96998 * 120.00400 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 7 4.1514 0.4717 0.0005 6 6 5.4646 0.5997 0.0005 7 6 6.0539 1.8486 0.0000 8 6 5.2490 2.9792 -0.0010 9 6 3.8750 2.8114 -0.0010 10 6 2.9597 4.0085 -0.0015 11 1 2.0703 3.7855 -0.5910 12 7 3.6593 5.1596 -0.5875 13 6 2.5561 4.3330 1.4136 14 1 2.9251 3.7322 2.2317 15 6 1.7148 5.3963 1.6640 16 7 1.2650 6.1277 0.6679 17 14 1.2151 5.7989 3.4183 18 1 1.8524 4.8327 4.3487 19 1 1.6568 7.1761 3.7552 20 1 -0.2617 5.7077 3.5457 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5137 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 6.0863 -0.2832 -0.0040 27 1 7.1296 1.9444 -0.0004 28 1 5.6848 3.9674 -0.0010 29 1 3.0460 5.9577 -0.6584 30 1 4.4882 5.3865 -0.0585 31 1 0.6728 6.8755 0.8440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104490139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = -9.805058 kcal Electronic energy + Delta-G solvation = -15197.291575 eV Core-core repulsion = 12671.805714 eV Total energy + Delta-G solvation = -2525.485861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97377 -37.33791 -35.02943 -32.01719 -31.58385 -30.39289 -28.92172 -26.04539 -23.87523 -22.98024 -21.74539 -20.16947 -17.87088 -16.55012 -16.31350 -15.61715 -15.20379 -14.58806 -14.05741 -13.45702 -13.26018 -13.17608 -12.67795 -12.22116 -12.17451 -11.85340 -11.75954 -11.24307 -11.05969 -10.92329 -10.69135 -10.28592 -10.06567 -9.79465 -9.01054 -8.92005 -8.60375 -7.66672 -7.18772 -6.06415 -4.21409 1.89341 1.99769 3.22470 3.31094 3.36306 3.71214 4.32428 4.52419 4.88410 5.16229 5.37231 5.43965 5.49176 5.64922 5.68637 5.82000 5.88756 6.10165 6.18569 6.34387 6.40578 6.53531 6.81595 6.95620 7.18716 7.67617 7.76642 8.00487 8.10149 8.49317 8.68176 8.93051 9.10153 9.48598 10.91910 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022327 B = 0.010951 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.811637 B = 2556.291476 C = 3271.966663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.287 6.287 4 C 0.313 3.687 5 N -0.548 5.548 6 C 0.101 3.899 7 C -0.214 4.214 8 C -0.047 4.047 9 C -0.090 4.090 10 C 0.251 3.749 11 H 0.056 0.944 12 N -0.851 5.851 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.066 3.934 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.282 1.282 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.358 0.642 30 H 0.309 0.691 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -8.277 -1.035 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.193 6.193 4 C 0.134 3.866 5 N -0.272 5.272 6 C -0.054 4.054 7 C -0.235 4.235 8 C -0.073 4.073 9 C -0.094 4.094 10 C 0.141 3.859 11 H 0.074 0.926 12 N -0.382 5.382 13 C -0.573 4.573 14 H 0.071 0.929 15 C -0.136 4.136 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.208 1.208 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.119 0.881 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.316 -9.226 -1.740 9.957 hybrid contribution -0.069 1.252 1.977 2.341 sum 3.247 -7.974 0.237 8.613 Atomic orbital electron populations 1.21782 0.93606 1.01912 1.03618 1.22442 0.94501 0.82480 1.01443 1.86420 1.16822 1.28531 1.87575 1.19653 0.83753 0.89541 0.93652 1.67203 1.06532 1.33468 1.20040 1.22038 0.89327 0.96752 0.97312 1.21849 1.00541 0.93693 1.07397 1.21220 0.92259 0.98984 0.94801 1.20582 0.95107 0.94337 0.99328 1.17782 0.90125 0.84160 0.93870 0.92581 1.59582 1.11012 1.11899 1.55665 1.21742 1.29191 1.13399 0.92963 0.92907 1.24980 0.95122 0.96096 0.97360 1.69743 1.33943 1.19100 1.30532 0.86476 0.78430 0.78057 0.84668 1.19836 1.20973 1.20833 0.91088 0.91509 0.91731 0.92512 0.92406 0.83691 0.85721 0.84545 0.82593 0.88121 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 37.16 0.38 -1.77 16 2 C 0.07 1.14 6.03 37.16 0.22 1.37 16 3 O -0.29 -6.29 9.27 -18.75 -0.17 -6.46 16 4 C 0.31 6.91 7.47 -17.13 -0.13 6.79 16 5 N -0.55 -10.74 9.22 -13.33 -0.12 -10.87 16 6 C 0.10 1.68 11.18 -17.56 -0.20 1.48 16 7 C -0.21 -3.51 10.11 -39.43 -0.40 -3.91 16 8 C -0.05 -0.92 9.37 -39.31 -0.37 -1.29 16 9 C -0.09 -2.05 5.02 -104.32 -0.52 -2.58 16 10 C 0.25 6.43 2.68 -70.02 -0.19 6.24 16 11 H 0.06 1.62 7.71 -51.93 -0.40 1.22 16 12 N -0.85 -20.28 8.80 -6.66 -0.06 -20.34 16 13 C -0.53 -14.63 8.71 -34.44 -0.30 -14.93 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.81 5.38 -17.82 -0.10 1.72 16 16 N -0.89 -24.79 11.54 55.43 0.64 -24.15 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.14 2.47 6.41 -52.48 -0.34 2.13 16 29 H 0.36 9.11 7.08 -39.29 -0.28 8.84 16 30 H 0.31 6.85 7.27 -39.29 -0.29 6.56 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -29.44 267.17 -6.10 -35.54 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -3.80 Total: 12.90 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.59 Total: -6.89 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.46 Total: -55.36 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.17 Total: -6.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.44 -6.10 -35.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104490139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.733 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds