Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46865 * 2 1 4 4 C 1.35682 * 117.00061 * 179.97438 * 3 2 1 5 5 N 1.32276 * 119.68034 * 0.02562 * 4 3 2 6 6 C 1.31941 * 121.64483 * 179.97438 * 5 4 3 7 7 C 1.38095 * 120.83019 * 359.97438 * 6 5 4 8 8 C 1.38782 * 119.28760 * 359.97438 * 7 6 5 9 9 C 1.38420 * 118.48952 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.44227 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46831 * 144.99885 * 10 9 8 12 12 N 1.46898 * 109.47280 * 25.00625 * 10 9 8 13 13 C 1.50696 * 109.47487 * 264.99933 * 10 9 8 14 14 H 1.08000 * 120.00118 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00076 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00111 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99933 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47327 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47476 * 119.99890 * 17 15 13 20 20 H 1.48505 * 109.47145 * 239.99762 * 17 15 13 21 21 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47303 * 299.99393 * 1 2 3 23 23 H 1.08997 * 109.47127 * 60.00073 * 1 2 3 24 24 H 1.08994 * 109.47457 * 240.00324 * 2 1 3 25 25 H 1.09002 * 109.47535 * 120.00142 * 2 1 3 26 26 H 1.07993 * 119.58485 * 180.27256 * 6 5 4 27 27 H 1.07998 * 120.35195 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.75199 * 179.97438 * 8 7 6 29 29 H 1.00897 * 111.00104 * 176.04399 * 12 10 9 30 30 H 1.00908 * 110.99659 * 299.99241 * 12 10 9 31 31 H 0.96998 * 120.00400 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 7 4.1514 0.4717 0.0005 6 6 5.4646 0.5997 0.0005 7 6 6.0539 1.8486 0.0000 8 6 5.2490 2.9792 -0.0010 9 6 3.8750 2.8114 -0.0010 10 6 2.9597 4.0085 -0.0015 11 1 2.0703 3.7855 -0.5910 12 7 3.6593 5.1596 -0.5875 13 6 2.5561 4.3330 1.4136 14 1 2.9251 3.7322 2.2317 15 6 1.7148 5.3963 1.6640 16 7 1.2650 6.1277 0.6679 17 14 1.2151 5.7989 3.4183 18 1 1.8524 4.8327 4.3487 19 1 1.6568 7.1761 3.7552 20 1 -0.2617 5.7077 3.5457 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5137 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 6.0863 -0.2832 -0.0040 27 1 7.1296 1.9444 -0.0004 28 1 5.6848 3.9674 -0.0010 29 1 3.0460 5.9577 -0.6584 30 1 4.4882 5.3865 -0.0585 31 1 0.6728 6.8755 0.8440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104490139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = -31.875995 kcal Electronic energy + Delta-G solvation = -15198.248643 eV Core-core repulsion = 12671.805714 eV Total energy + Delta-G solvation = -2526.442929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.47440 -38.82853 -36.90782 -33.91465 -32.89759 -32.03669 -30.47600 -28.03201 -25.47618 -24.50196 -23.16744 -21.89910 -19.35746 -18.63102 -17.87010 -17.08653 -16.90775 -16.25880 -15.73003 -15.02250 -14.73933 -14.71160 -14.44552 -14.00075 -13.35823 -13.31475 -13.23483 -13.10736 -12.83033 -12.68540 -12.37861 -12.00309 -11.66751 -11.63382 -10.77240 -10.45915 -10.42584 -9.33431 -9.06390 -8.11708 -6.36722 0.42974 0.50250 1.33647 1.36514 1.47667 2.30498 2.35648 3.01610 3.04894 3.51351 4.10331 4.13129 4.18280 4.24660 4.34226 4.45991 4.52808 4.68694 4.86204 4.90777 4.95186 5.15886 5.24981 5.43448 5.62377 5.69521 5.77043 6.04263 6.53562 6.63636 6.88707 7.02347 7.11594 7.38136 8.83105 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022327 B = 0.010951 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.811637 B = 2556.291476 C = 3271.966663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 O -0.321 6.321 4 C 0.291 3.709 5 N -0.553 5.553 6 C 0.106 3.894 7 C -0.200 4.200 8 C -0.050 4.050 9 C -0.133 4.133 10 C 0.261 3.739 11 H 0.008 0.992 12 N -0.841 5.841 13 C -0.547 4.547 14 H 0.037 0.963 15 C 0.023 3.977 16 N -0.915 5.915 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.280 1.280 21 H 0.109 0.891 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.194 0.806 27 H 0.172 0.828 28 H 0.145 0.855 29 H 0.347 0.653 30 H 0.320 0.680 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -9.439 -0.408 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 O -0.229 6.229 4 C 0.113 3.887 5 N -0.278 5.278 6 C -0.049 4.049 7 C -0.220 4.220 8 C -0.076 4.076 9 C -0.137 4.137 10 C 0.151 3.849 11 H 0.026 0.974 12 N -0.370 5.370 13 C -0.587 4.587 14 H 0.055 0.945 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.198 1.198 20 H -0.206 1.206 21 H 0.128 0.872 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.211 0.789 27 H 0.189 0.811 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.130 0.870 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.937 -10.395 -1.117 11.562 hybrid contribution -0.477 1.521 1.740 2.360 sum 4.460 -8.874 0.623 9.951 Atomic orbital electron populations 1.21816 0.91735 1.04097 1.02652 1.22714 0.96006 0.80765 1.01814 1.86381 1.17425 1.31245 1.87801 1.19780 0.84151 0.89991 0.94813 1.67305 1.07816 1.32424 1.20245 1.22958 0.88648 0.98807 0.94460 1.22294 1.02535 0.92254 1.04882 1.21465 0.91219 1.00782 0.94137 1.20463 0.96281 0.93614 1.03299 1.17408 0.89611 0.85893 0.92034 0.97387 1.59518 1.10885 1.11017 1.55594 1.21888 1.29773 1.13472 0.93580 0.94466 1.25695 0.95015 0.95937 1.01029 1.69839 1.34137 1.19338 1.32152 0.85524 0.77954 0.78046 0.80160 1.20081 1.19781 1.20551 0.87247 0.92783 0.92326 0.91727 0.92219 0.78946 0.81057 0.83765 0.83847 0.86967 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 10.28 71.98 0.74 -3.37 16 2 C 0.06 2.12 6.03 71.98 0.43 2.56 16 3 O -0.32 -14.64 9.27 -90.00 -0.83 -15.47 16 4 C 0.29 13.01 7.47 84.78 0.63 13.64 16 5 N -0.55 -20.88 9.22 -308.93 -2.85 -23.73 16 6 C 0.11 3.16 11.18 84.64 0.95 4.10 16 7 C -0.20 -5.80 10.11 22.37 0.23 -5.57 16 8 C -0.05 -1.89 9.37 22.44 0.21 -1.68 16 9 C -0.13 -6.17 5.02 -19.67 -0.10 -6.27 16 10 C 0.26 13.93 2.68 43.42 0.12 14.05 16 11 H 0.01 0.51 7.71 -2.39 -0.02 0.49 16 12 N -0.84 -41.09 8.80 -174.97 -1.54 -42.63 16 13 C -0.55 -30.98 8.71 25.60 0.22 -30.76 16 14 H 0.04 2.17 7.74 -2.91 -0.02 2.14 16 15 C 0.02 1.29 5.38 84.66 0.46 1.74 16 16 N -0.91 -51.84 11.54 21.45 0.25 -51.59 16 17 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.05 8.10 -2.39 -0.02 2.04 16 25 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 26 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.14 5.02 6.41 -2.91 -0.02 5.01 16 29 H 0.35 18.21 7.08 -89.70 -0.63 17.58 16 30 H 0.32 14.29 7.27 -89.69 -0.65 13.64 16 31 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -65.92 267.17 0.80 -65.12 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.14 Total: 33.75 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 3.89 Total: -11.56 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -4.14 Total: -117.95 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.83 Total: -15.47 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.92 0.80 -65.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104490139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.244 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds