Wall clock time and date at job start Mon Mar 30 2020 03:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36016 * 116.99717 * 2 1 4 4 C 1.38510 * 120.07817 * 359.97438 * 3 2 1 5 5 C 1.38284 * 120.01316 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.18354 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.91824 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46560 * 199.99795 * 7 6 5 9 9 N 1.46898 * 109.47348 * 319.99512 * 7 6 5 10 10 C 1.50701 * 109.47151 * 80.00150 * 7 6 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27762 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.38224 * 120.16026 * 0.28956 * 6 5 4 19 19 C 1.38729 * 119.97845 * 359.45488 * 18 6 5 20 20 N 1.39961 * 120.08916 * 180.27329 * 19 18 6 21 21 H 1.09000 * 109.46544 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47261 * 299.99901 * 1 2 3 23 23 H 1.09000 * 109.47356 * 60.00310 * 1 2 3 24 24 H 1.07992 * 119.99114 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.90711 * 179.97438 * 5 4 3 26 26 H 1.00901 * 110.99361 * 59.99871 * 9 7 6 27 27 H 1.00897 * 111.00235 * 183.95410 * 9 7 6 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 29 29 H 1.08003 * 120.00696 * 179.72638 * 18 6 5 30 30 H 0.97001 * 119.99925 * 180.25536 * 20 19 18 31 31 H 0.97006 * 120.00064 * 0.24635 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2936 2.3746 -0.0005 5 6 1.9228 3.6060 -0.0011 6 6 3.3032 3.6813 -0.0005 7 6 3.9826 5.0265 -0.0005 8 1 5.0086 4.9152 -0.3516 9 7 3.2568 5.9417 -0.8913 10 6 3.9884 5.5864 1.3986 11 1 3.5440 5.0245 2.2069 12 6 4.5552 6.8186 1.6456 13 7 5.0960 7.5030 0.6613 14 14 4.5554 7.5161 3.3785 15 1 3.8903 6.5582 4.2977 16 1 5.9549 7.7385 3.8225 17 1 3.8207 8.8066 3.3928 18 6 4.0617 2.5258 -0.0055 19 6 3.4376 1.2868 0.0004 20 7 4.2034 0.1153 0.0011 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.2151 2.3193 -0.0005 25 1 1.3341 4.5115 -0.0019 26 1 2.3023 6.0613 -0.5869 27 1 3.7290 6.8308 -0.9589 28 1 5.4944 8.3701 0.8350 29 1 5.1400 2.5875 -0.0095 30 1 3.7656 -0.7503 0.0015 31 1 5.1720 0.1690 0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104491924.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:11 Heat of formation + Delta-G solvation = -17.995925 kcal Electronic energy + Delta-G solvation = -14889.101845 eV Core-core repulsion = 12363.260801 eV Total energy + Delta-G solvation = -2525.841044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62651 -37.21489 -34.91254 -33.34092 -31.18791 -29.22373 -28.15506 -26.65772 -25.69329 -22.63550 -21.68299 -19.70315 -17.61134 -16.65023 -16.40668 -15.75924 -15.36117 -14.79731 -14.56630 -14.10463 -13.54655 -13.11791 -12.90600 -12.42539 -12.32872 -11.59751 -11.51846 -11.20923 -10.91707 -10.70152 -10.66847 -10.31419 -10.10718 -9.66330 -9.54764 -8.61554 -7.74725 -7.13662 -6.66085 -6.04262 -4.21614 2.13906 2.37552 3.22999 3.31786 3.37279 3.66944 4.33179 4.39431 4.65087 5.16734 5.23224 5.33784 5.43229 5.60770 5.80603 6.04654 6.19775 6.32651 6.51233 6.68115 6.84327 7.15704 7.30045 7.48288 7.62546 7.78574 7.91441 8.12689 8.20750 8.26120 8.72746 8.99099 9.17522 9.50187 10.91982 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038609 B = 0.007055 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.046144 B = 3967.695629 C = 4016.908613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.018 3.982 4 C -0.163 4.163 5 C -0.128 4.128 6 C -0.008 4.008 7 C 0.241 3.759 8 H 0.045 0.955 9 N -0.849 5.849 10 C -0.539 4.539 11 H 0.057 0.943 12 C 0.065 3.935 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.168 4.168 19 C 0.189 3.811 20 N -0.882 5.882 21 H 0.089 0.911 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.311 0.689 27 H 0.354 0.646 28 H 0.264 0.736 29 H 0.121 0.879 30 H 0.395 0.605 31 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -11.151 -1.126 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.245 6.245 3 C -0.029 4.029 4 C -0.182 4.182 5 C -0.149 4.149 6 C -0.009 4.009 7 C 0.131 3.869 8 H 0.063 0.937 9 N -0.379 5.379 10 C -0.579 4.579 11 H 0.075 0.925 12 C -0.137 4.137 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.191 4.191 19 C 0.086 3.914 20 N -0.424 5.424 21 H 0.107 0.893 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.121 0.879 27 H 0.170 0.830 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.223 0.777 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.605 -11.644 -1.748 13.041 hybrid contribution -0.096 0.928 1.922 2.137 sum -5.701 -10.716 0.174 12.139 Atomic orbital electron populations 1.22837 0.79597 1.02607 1.00938 1.85868 1.20306 1.27446 1.90918 1.18226 0.90268 0.84235 1.10220 1.20904 0.98705 0.92236 1.06365 1.20517 0.94590 0.95953 1.03791 1.20140 0.93086 0.95913 0.91796 1.17973 0.92936 0.85104 0.90904 0.93689 1.59527 1.05310 1.19309 1.53753 1.21895 1.38036 1.03070 0.94913 0.92491 1.25023 0.94472 0.96942 0.97306 1.69755 1.38757 1.13735 1.31186 0.86481 0.77786 0.78838 0.84574 1.19741 1.20896 1.20983 1.20351 0.99517 0.89691 1.09584 1.17054 0.87191 0.87611 0.99495 1.42179 1.07749 1.05299 1.87189 0.89302 0.93291 0.93279 0.86641 0.86493 0.87934 0.82966 0.92584 0.86107 0.77715 0.77933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 9.81 101.05 0.99 1.40 16 2 O -0.33 -5.14 9.75 -19.79 -0.19 -5.33 16 3 C 0.02 0.32 6.70 -39.08 -0.26 0.05 16 4 C -0.16 -2.93 9.04 -39.46 -0.36 -3.29 16 5 C -0.13 -2.63 9.28 -39.56 -0.37 -2.99 16 6 C -0.01 -0.18 4.89 -104.62 -0.51 -0.69 16 7 C 0.24 6.09 2.95 -70.02 -0.21 5.88 16 8 H 0.05 1.24 8.00 -51.93 -0.42 0.83 16 9 N -0.85 -20.55 9.01 -6.65 -0.06 -20.61 16 10 C -0.54 -14.66 8.70 -34.44 -0.30 -14.96 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.75 5.38 -17.82 -0.10 1.65 16 13 N -0.89 -24.78 11.53 55.43 0.64 -24.14 16 14 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.17 -3.43 9.51 -39.41 -0.37 -3.81 16 19 C 0.19 3.45 6.77 -83.56 -0.57 2.89 16 20 N -0.88 -12.73 9.09 32.51 0.30 -12.44 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 24 H 0.12 1.74 6.30 -52.49 -0.33 1.41 16 25 H 0.12 2.33 6.65 -52.49 -0.35 1.99 16 26 H 0.31 7.13 7.33 -39.29 -0.29 6.84 16 27 H 0.35 9.13 7.07 -39.29 -0.28 8.85 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 29 H 0.12 2.35 8.03 -52.48 -0.42 1.93 16 30 H 0.40 5.13 8.19 -40.82 -0.33 4.80 16 31 H 0.39 4.87 8.85 -40.82 -0.36 4.51 16 LS Contribution 263.21 15.07 3.97 3.97 Total: -1.00 -29.29 263.21 -5.96 -35.25 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -3.54 Total: 21.07 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.05 Total: -13.86 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.87 Total: -57.18 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.19 Total: -5.33 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.29 -5.96 -35.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104491924.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.256 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds