Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36014 * 117.00028 * 2 1 4 4 C 1.38708 * 120.49410 * 359.97438 * 3 2 1 5 5 C 1.38847 * 118.45792 * 179.97438 * 4 3 2 6 6 C 1.38015 * 119.36793 * 0.02562 * 5 4 3 7 7 N 1.32011 * 120.95785 * 0.02562 * 6 5 4 8 8 C 1.32298 * 121.67584 * 359.97438 * 7 6 5 9 9 N 1.39248 * 119.73769 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00256 * 236.05312 * 9 8 7 11 11 C 1.46903 * 110.99822 * 0.02562 * 9 8 7 12 12 C 1.50689 * 109.47309 * 170.00021 * 11 9 8 13 13 H 1.08004 * 120.00277 * 0.02562 * 12 11 9 14 14 C 1.37886 * 120.00320 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99435 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00400 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47373 * 59.99298 * 16 14 12 18 18 H 1.48492 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46772 * 299.99665 * 16 14 12 20 20 H 1.09005 * 109.47304 * 60.00534 * 1 2 3 21 21 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47677 * 299.99745 * 1 2 3 23 23 H 1.08000 * 120.76932 * 359.96020 * 4 3 2 24 24 H 1.07996 * 120.31917 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.51887 * 179.72422 * 6 5 4 26 26 H 1.09000 * 109.47868 * 59.99253 * 10 9 8 27 27 H 1.09004 * 109.47207 * 179.97438 * 10 9 8 28 28 H 1.09001 * 109.47155 * 299.99530 * 10 9 8 29 29 H 1.09011 * 109.46783 * 290.00198 * 11 9 8 30 30 H 1.09000 * 109.46829 * 49.99601 * 11 9 8 31 31 H 0.96996 * 119.99876 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3011 2.3817 -0.0005 5 6 1.9750 3.5956 0.0000 6 6 3.3551 3.6036 0.0006 7 7 4.0407 2.4755 0.0000 8 6 3.4394 1.2971 -0.0005 9 7 4.2024 0.1323 -0.0005 10 6 3.8508 -0.7275 -1.1385 11 6 5.6381 0.4434 0.0007 12 6 6.4252 -0.8176 0.2474 13 1 5.9105 -1.7566 0.3887 14 6 7.8027 -0.7731 0.2917 15 7 8.4295 0.3700 0.1182 16 14 8.7784 -2.3365 0.5968 17 1 8.4856 -3.3201 -0.4764 18 1 10.2297 -2.0221 0.5969 19 1 8.3956 -2.9102 1.9119 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.2216 2.3489 -0.0016 24 1 1.4245 4.5248 -0.0008 25 1 3.8818 4.5465 -0.0035 26 1 4.0326 -0.1905 -2.0695 27 1 4.4618 -1.6299 -1.1146 28 1 2.7972 -0.9999 -1.0761 29 1 5.9195 0.8645 -0.9646 30 1 5.8526 1.1656 0.7885 31 1 9.3984 0.4014 0.1497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160179567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = 17.833440 kcal Electronic energy + Delta-G solvation = -15105.980831 eV Core-core repulsion = 12581.693465 eV Total energy + Delta-G solvation = -2524.287366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41922 -37.83079 -36.21323 -32.55074 -31.39758 -29.66761 -27.52222 -27.01113 -25.13841 -23.03105 -22.17807 -20.49360 -17.83962 -16.79056 -16.46071 -15.83567 -15.63818 -14.62521 -14.31444 -14.03307 -14.01626 -13.37624 -12.97357 -12.60611 -12.15508 -11.97861 -11.55293 -11.24782 -11.15462 -10.82596 -10.67619 -10.40607 -10.00609 -9.59292 -9.19131 -8.96090 -8.53802 -8.31846 -7.02860 -5.96247 -3.99029 1.60790 1.65542 3.37232 3.40958 3.43533 3.44253 4.15397 4.41166 4.61180 4.94353 5.01109 5.18132 5.19256 5.35602 5.38700 5.48567 5.63190 5.72811 6.18886 6.22483 6.28626 6.37243 6.70822 6.77508 7.19842 7.41588 7.60326 7.81632 7.98586 8.17266 8.53456 8.65906 9.08494 9.63748 11.14177 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039105 B = 0.007724 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.854850 B = 3624.387766 C = 4228.185240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.297 6.297 3 C 0.046 3.954 4 C -0.150 4.150 5 C -0.188 4.188 6 C 0.089 3.911 7 N -0.479 5.479 8 C 0.315 3.685 9 N -0.469 5.469 10 C 0.039 3.961 11 C 0.203 3.797 12 C -0.519 4.519 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.049 0.951 21 H 0.097 0.903 22 H 0.050 0.950 23 H 0.132 0.868 24 H 0.127 0.873 25 H 0.152 0.848 26 H 0.022 0.978 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.007 0.993 30 H 0.047 0.953 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.369 3.051 -1.796 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.210 6.210 3 C -0.004 4.004 4 C -0.177 4.177 5 C -0.210 4.210 6 C -0.068 4.068 7 N -0.195 5.195 8 C 0.079 3.921 9 N -0.185 5.185 10 C -0.107 4.107 11 C 0.079 3.921 12 C -0.558 4.558 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.531 5.531 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.067 0.933 21 H 0.115 0.885 22 H 0.069 0.931 23 H 0.149 0.851 24 H 0.145 0.855 25 H 0.169 0.831 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.238 2.610 -1.388 14.541 hybrid contribution -0.422 -0.146 -0.316 0.547 sum -14.660 2.464 -1.704 14.963 Atomic orbital electron populations 1.23011 0.79855 1.03574 1.00688 1.86270 1.19999 1.25734 1.88952 1.19583 0.91949 0.85152 1.03726 1.21390 0.99863 0.92003 1.04416 1.21657 0.95580 0.97631 1.06148 1.22475 0.91178 0.96144 0.96957 1.67981 1.39276 0.97270 1.14932 1.19869 0.87201 0.90212 0.94831 1.59188 1.10067 1.10214 1.38994 1.22366 1.01589 0.97701 0.89067 1.19740 0.77533 0.97056 0.97776 1.21172 0.90974 0.94330 1.49309 0.91916 1.24963 0.97668 0.96322 0.95407 1.69979 1.08668 1.24745 1.49745 0.86554 0.78707 0.83249 0.78839 1.20265 1.21314 1.20179 0.93252 0.88488 0.93119 0.85067 0.85456 0.83102 0.95976 0.89582 0.90985 0.97490 0.93530 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.83 101.05 0.99 1.25 16 2 O -0.30 -4.83 7.78 -19.79 -0.15 -4.98 16 3 C 0.05 0.83 6.44 -38.92 -0.25 0.58 16 4 C -0.15 -2.17 9.14 -39.18 -0.36 -2.53 16 5 C -0.19 -2.64 10.10 -39.44 -0.40 -3.04 16 6 C 0.09 1.51 11.17 -17.56 -0.20 1.31 16 7 N -0.48 -10.43 8.61 -12.29 -0.11 -10.54 16 8 C 0.31 6.85 6.41 -154.71 -0.99 5.86 16 9 N -0.47 -11.28 4.70 -182.24 -0.86 -12.14 16 10 C 0.04 0.81 9.02 60.06 0.54 1.35 16 11 C 0.20 5.67 3.98 -4.98 -0.02 5.65 16 12 C -0.52 -15.13 8.46 -34.44 -0.29 -15.42 16 13 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 16 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 21 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 23 H 0.13 1.43 6.44 -52.49 -0.34 1.09 16 24 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 25 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 1.83 6.76 -51.93 -0.35 1.48 16 28 H 0.07 1.33 5.55 -51.93 -0.29 1.04 16 29 H 0.01 0.21 8.12 -51.92 -0.42 -0.21 16 30 H 0.05 1.42 7.52 -51.93 -0.39 1.03 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 262.87 15.07 3.96 3.96 Total: -1.00 -33.24 262.87 -6.30 -39.54 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.79 Total: -2.90 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.07 Total: -3.38 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.23 Total: -49.25 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.15 Total: -4.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.24 -6.30 -39.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160179567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.369 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds