Wall clock time and date at job start Mon Mar 30 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36014 * 117.00028 * 2 1 4 4 C 1.38708 * 120.49410 * 359.97438 * 3 2 1 5 5 C 1.38847 * 118.45792 * 179.97438 * 4 3 2 6 6 C 1.38015 * 119.36793 * 0.02562 * 5 4 3 7 7 N 1.32011 * 120.95785 * 0.02562 * 6 5 4 8 8 C 1.32298 * 121.67584 * 359.97438 * 7 6 5 9 9 N 1.39248 * 119.73769 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00256 * 236.05312 * 9 8 7 11 11 C 1.46903 * 110.99822 * 0.02562 * 9 8 7 12 12 C 1.50689 * 109.47309 * 170.00021 * 11 9 8 13 13 H 1.08004 * 120.00277 * 0.02562 * 12 11 9 14 14 C 1.37886 * 120.00320 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99435 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00400 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47373 * 59.99298 * 16 14 12 18 18 H 1.48492 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46772 * 299.99665 * 16 14 12 20 20 H 1.09005 * 109.47304 * 60.00534 * 1 2 3 21 21 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47677 * 299.99745 * 1 2 3 23 23 H 1.08000 * 120.76932 * 359.96020 * 4 3 2 24 24 H 1.07996 * 120.31917 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.51887 * 179.72422 * 6 5 4 26 26 H 1.09000 * 109.47868 * 59.99253 * 10 9 8 27 27 H 1.09004 * 109.47207 * 179.97438 * 10 9 8 28 28 H 1.09001 * 109.47155 * 299.99530 * 10 9 8 29 29 H 1.09011 * 109.46783 * 290.00198 * 11 9 8 30 30 H 1.09000 * 109.46829 * 49.99601 * 11 9 8 31 31 H 0.96996 * 119.99876 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3011 2.3817 -0.0005 5 6 1.9750 3.5956 0.0000 6 6 3.3551 3.6036 0.0006 7 7 4.0407 2.4755 0.0000 8 6 3.4394 1.2971 -0.0005 9 7 4.2024 0.1323 -0.0005 10 6 3.8508 -0.7275 -1.1385 11 6 5.6381 0.4434 0.0007 12 6 6.4252 -0.8176 0.2474 13 1 5.9105 -1.7566 0.3887 14 6 7.8027 -0.7731 0.2917 15 7 8.4295 0.3700 0.1182 16 14 8.7784 -2.3365 0.5968 17 1 8.4856 -3.3201 -0.4764 18 1 10.2297 -2.0221 0.5969 19 1 8.3956 -2.9102 1.9119 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.2216 2.3489 -0.0016 24 1 1.4245 4.5248 -0.0008 25 1 3.8818 4.5465 -0.0035 26 1 4.0326 -0.1905 -2.0695 27 1 4.4618 -1.6299 -1.1146 28 1 2.7972 -0.9999 -1.0761 29 1 5.9195 0.8645 -0.9646 30 1 5.8526 1.1656 0.7885 31 1 9.3984 0.4014 0.1497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160179567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:09 Heat of formation + Delta-G solvation = -6.018061 kcal Electronic energy + Delta-G solvation = -15107.015109 eV Core-core repulsion = 12581.693465 eV Total energy + Delta-G solvation = -2525.321645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.76713 -39.08040 -37.87924 -34.72801 -32.73067 -31.11744 -29.26569 -28.26765 -26.84050 -24.73663 -23.52906 -22.20662 -19.11415 -18.52466 -18.03152 -17.49813 -16.79657 -16.53229 -15.87123 -15.53194 -15.26747 -14.80527 -14.46575 -14.10976 -13.96294 -13.41924 -13.14409 -12.82730 -12.70467 -12.48431 -12.25081 -12.12708 -11.97555 -11.41715 -10.88959 -10.59086 -10.35936 -10.02841 -8.59327 -8.19925 -6.33257 0.27881 0.39438 1.40288 1.45349 1.53242 2.33345 2.39699 2.77999 3.08109 3.12397 3.72676 3.91293 4.05580 4.21664 4.43556 4.46760 4.50700 4.55821 4.69996 4.79267 4.94815 4.99910 5.18233 5.22821 5.30554 5.56881 5.64441 5.98189 6.04069 6.27493 6.69913 6.78601 7.24432 7.37072 8.91211 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039105 B = 0.007724 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.854850 B = 3624.387766 C = 4228.185240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.050 3.950 4 C -0.140 4.140 5 C -0.157 4.157 6 C 0.064 3.936 7 N -0.530 5.530 8 C 0.260 3.740 9 N -0.485 5.485 10 C 0.047 3.953 11 C 0.231 3.769 12 C -0.539 4.539 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.977 3.023 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.070 0.930 21 H 0.117 0.883 22 H 0.066 0.934 23 H 0.179 0.821 24 H 0.178 0.822 25 H 0.172 0.828 26 H 0.012 0.988 27 H 0.073 0.927 28 H 0.099 0.901 29 H -0.033 1.033 30 H 0.007 0.993 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 2.953 -1.628 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.000 4.000 4 C -0.166 4.166 5 C -0.177 4.177 6 C -0.092 4.092 7 N -0.245 5.245 8 C 0.026 3.974 9 N -0.202 5.202 10 C -0.099 4.099 11 C 0.106 3.894 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.206 1.206 19 H -0.193 1.193 20 H 0.088 0.912 21 H 0.135 0.865 22 H 0.085 0.915 23 H 0.196 0.804 24 H 0.196 0.804 25 H 0.189 0.811 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.117 0.883 29 H -0.015 1.015 30 H 0.025 0.975 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.915 2.524 -1.223 17.145 hybrid contribution 0.181 0.059 -0.390 0.434 sum -16.734 2.583 -1.613 17.009 Atomic orbital electron populations 1.23408 0.76616 1.05649 1.02387 1.86199 1.23248 1.25300 1.88724 1.19523 0.90639 0.87014 1.02845 1.21932 1.01959 0.90575 1.02179 1.22201 0.94352 0.99650 1.01545 1.23000 0.93120 0.95465 0.97664 1.67793 1.41939 0.98774 1.15987 1.19941 0.88963 0.89484 0.98978 1.59228 1.07642 1.12474 1.40842 1.22327 1.02845 0.96609 0.88140 1.19109 0.80849 0.95496 0.93971 1.21511 0.91810 0.94786 1.49609 0.91543 1.26007 0.98788 1.00225 0.94631 1.70136 1.09134 1.27420 1.50465 0.85331 0.76881 0.78515 0.79231 1.18778 1.20569 1.19267 0.91170 0.86522 0.91528 0.80407 0.80430 0.81070 0.96952 0.90801 0.88299 1.01515 0.97516 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.83 113.37 1.11 1.35 16 2 O -0.32 -9.83 7.78 -93.71 -0.73 -10.56 16 3 C 0.05 1.72 6.44 22.70 0.15 1.87 16 4 C -0.14 -3.49 9.14 22.53 0.21 -3.28 16 5 C -0.16 -3.79 10.10 22.36 0.23 -3.56 16 6 C 0.06 2.12 11.17 84.61 0.95 3.06 16 7 N -0.53 -24.06 8.61 -192.79 -1.66 -25.72 16 8 C 0.26 11.68 6.41 133.11 0.85 12.53 16 9 N -0.49 -24.57 4.70 -730.49 -3.43 -28.00 16 10 C 0.05 2.03 9.02 127.69 1.15 3.19 16 11 C 0.23 13.88 3.98 85.55 0.34 14.22 16 12 C -0.54 -32.81 8.46 25.60 0.22 -32.60 16 13 H 0.07 3.89 7.12 -2.91 -0.02 3.87 16 14 C 0.00 0.11 5.46 84.66 0.46 0.58 16 15 N -0.93 -59.34 13.29 21.45 0.28 -59.06 16 16 Si 0.98 45.97 29.54 68.60 2.03 48.00 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H 0.07 0.93 7.70 -2.38 -0.02 0.91 16 21 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 0.94 7.70 -2.39 -0.02 0.93 16 23 H 0.18 2.74 6.44 -2.91 -0.02 2.72 16 24 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 25 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 3.29 6.76 -2.38 -0.02 3.28 16 28 H 0.10 3.68 5.55 -2.39 -0.01 3.67 16 29 H -0.03 -2.16 8.12 -2.38 -0.02 -2.18 16 30 H 0.01 0.44 7.52 -2.39 -0.02 0.43 16 31 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.06 262.87 3.27 -74.79 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.12 Total: 3.21 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.66 Total: -2.65 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.81 Total: -112.78 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.73 Total: -10.56 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -78.06 3.27 -74.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160179567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.768 kcal (2) G-P(sol) polarization free energy of solvation -78.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds