Wall clock time and date at job start Mon Mar 30 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47386 * 305.57131 * 3 2 1 5 5 C 1.50705 * 109.47267 * 65.57165 * 3 2 1 6 6 H 1.07999 * 119.99780 * 27.34490 * 5 3 2 7 7 C 1.37876 * 120.00206 * 207.34183 * 5 3 2 8 8 N 1.31516 * 119.99912 * 353.59771 * 7 5 3 9 9 Si 1.86799 * 119.99999 * 173.59406 * 7 5 3 10 10 H 1.48500 * 109.47192 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47217 * 300.00084 * 9 7 5 12 12 H 1.48495 * 109.47073 * 60.00047 * 9 7 5 13 13 C 1.50702 * 109.47446 * 185.57277 * 3 2 1 14 14 O 1.21355 * 119.99621 * 270.00074 * 13 3 2 15 15 C 1.46288 * 120.00218 * 89.99984 * 13 3 2 16 16 C 1.38837 * 126.93234 * 0.02562 * 15 13 3 17 17 C 1.39517 * 105.33558 * 179.97438 * 16 15 13 18 18 N 1.30928 * 107.94709 * 359.97438 * 17 16 15 19 19 N 1.28446 * 111.01837 * 359.75565 * 18 17 16 20 20 C 1.46498 * 125.21722 * 180.27763 * 19 18 17 21 21 H 1.08991 * 109.47483 * 294.50339 * 1 2 3 22 22 H 1.08996 * 109.46918 * 54.50668 * 1 2 3 23 23 H 1.09005 * 109.46561 * 174.49752 * 1 2 3 24 24 H 1.08998 * 109.47665 * 239.99901 * 2 1 3 25 25 H 1.08995 * 109.47330 * 119.99733 * 2 1 3 26 26 H 0.96997 * 120.00179 * 354.43156 * 8 7 5 27 27 H 1.07998 * 127.33408 * 359.97438 * 16 15 13 28 28 H 1.07997 * 126.02745 * 180.02562 * 17 16 15 29 29 H 1.09004 * 109.46676 * 270.14102 * 20 19 18 30 30 H 1.08997 * 109.47271 * 30.14143 * 20 19 18 31 31 H 1.08999 * 109.46830 * 150.14346 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 1.6534 2.1120 1.2936 6 1 1.5146 1.5212 2.1870 7 6 1.4769 3.4787 1.3367 8 7 1.7671 4.2127 0.2847 9 14 0.8256 4.2879 2.8893 10 1 0.7273 5.7547 2.6792 11 1 -0.5190 3.7424 3.2051 12 1 1.7500 4.0098 4.0176 13 6 3.5406 1.4449 -0.1380 14 8 4.2410 1.4118 0.8525 15 6 4.1530 1.4870 -1.4658 16 6 3.4944 1.5280 -2.6874 17 6 4.5039 1.5581 -3.6500 18 7 5.6556 1.5367 -3.0276 19 7 5.4906 1.5006 -1.7543 20 6 6.5690 1.4746 -0.7631 21 1 -0.3634 0.4262 0.9350 22 1 -0.3633 0.5967 -0.8367 23 1 -0.3633 -1.0230 -0.0985 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.1805 3.8048 -0.4922 27 1 2.4278 1.5350 -2.8564 28 1 4.3605 1.5938 -4.7198 29 1 6.8399 0.4409 -0.5480 30 1 7.4371 2.0033 -1.1567 31 1 6.2323 1.9601 0.1528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160229302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:47 Heat of formation + Delta-G solvation = 4.803167 kcal Electronic energy + Delta-G solvation = -15369.048459 eV Core-core repulsion = 12844.196057 eV Total energy + Delta-G solvation = -2524.852401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.43373 -40.08078 -36.51352 -34.30308 -33.86707 -32.05822 -29.02920 -28.08067 -26.20359 -24.15881 -22.77588 -21.88210 -20.51616 -18.73183 -18.23557 -17.20649 -16.46569 -16.01488 -15.87222 -15.62676 -15.07847 -14.68123 -14.51276 -14.04802 -13.82561 -13.66819 -13.36573 -12.82377 -12.67856 -12.61266 -12.01766 -11.93349 -11.86189 -11.48780 -10.86268 -10.66508 -10.26586 -10.19992 -9.99790 -8.63844 -6.35278 0.05798 1.49686 1.53555 1.58973 1.61161 1.78649 2.05354 2.55369 3.01676 3.39557 3.58928 4.16998 4.17501 4.26456 4.30438 4.32961 4.47977 4.50601 4.60141 4.79448 4.88907 5.01618 5.11846 5.22166 5.39292 5.53580 5.57588 5.73010 5.95131 6.17199 6.56395 6.74312 7.03830 7.39939 8.74821 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.009913 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.043223 B = 2823.939051 C = 3165.458611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.002 4.002 4 H 0.052 0.948 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.026 4.026 8 N -0.931 5.931 9 Si 1.106 2.894 10 H -0.285 1.285 11 H -0.262 1.262 12 H -0.282 1.282 13 C 0.418 3.582 14 O -0.496 6.496 15 C -0.091 4.091 16 C -0.173 4.173 17 C -0.005 4.005 18 N -0.299 5.299 19 N -0.277 5.277 20 C 0.083 3.917 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.258 0.742 27 H 0.174 0.826 28 H 0.225 0.775 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -6.457 -5.391 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.130 4.130 3 C -0.022 4.022 4 H 0.070 0.930 5 C -0.614 4.614 6 H 0.064 0.936 7 C -0.225 4.225 8 N -0.568 5.568 9 Si 0.928 3.072 10 H -0.210 1.210 11 H -0.187 1.187 12 H -0.208 1.208 13 C 0.297 3.703 14 O -0.372 6.372 15 C -0.216 4.216 16 C -0.202 4.202 17 C -0.180 4.180 18 N -0.133 5.133 19 N -0.066 5.066 20 C -0.057 4.057 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.191 0.809 28 H 0.242 0.758 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.683 -5.036 -4.285 7.568 hybrid contribution -0.045 -1.208 -0.452 1.290 sum 3.639 -6.243 -4.737 8.640 Atomic orbital electron populations 1.21536 0.93946 1.01169 1.01777 1.21259 0.97741 0.93853 1.00173 1.19387 0.87379 0.96605 0.98840 0.92982 1.21936 1.49469 0.94455 0.95515 0.93634 1.27123 0.95147 0.95513 1.04700 1.70930 1.40723 1.39239 1.05879 0.83075 0.77155 0.75339 0.71635 1.21030 1.18656 1.20756 1.23393 0.94393 0.68441 0.84116 1.90321 1.66096 1.38973 1.41812 1.23053 0.85498 1.14200 0.98871 1.22667 1.01788 1.05774 0.89945 1.24172 0.86836 1.05020 1.01981 1.73059 1.28668 1.20673 0.90916 1.46062 1.05858 1.49764 1.04903 1.22405 0.88253 1.05387 0.89648 0.93554 0.93131 0.91177 0.92038 0.93927 0.93186 0.80901 0.75839 0.88510 0.86625 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.64 71.98 0.69 -3.71 16 2 C -0.09 -3.63 5.37 30.59 0.16 -3.47 16 3 C 0.00 -0.10 1.45 -12.28 -0.02 -0.12 16 4 H 0.05 2.56 6.18 -2.39 -0.01 2.55 16 5 C -0.58 -31.38 6.85 25.60 0.18 -31.21 16 6 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 7 C -0.03 -1.44 5.45 84.65 0.46 -0.98 16 8 N -0.93 -55.30 13.56 21.45 0.29 -55.01 16 9 Si 1.11 50.09 29.91 68.60 2.05 52.14 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.42 19.98 5.88 27.78 0.16 20.15 16 14 O -0.50 -25.91 14.70 -3.26 -0.05 -25.96 16 15 C -0.09 -3.76 6.93 40.60 0.28 -3.48 16 16 C -0.17 -6.05 10.36 22.72 0.24 -5.81 16 17 C -0.01 -0.16 12.02 85.14 1.02 0.86 16 18 N -0.30 -10.29 11.90 -57.21 -0.68 -10.97 16 19 N -0.28 -10.36 3.76 -356.36 -1.34 -11.70 16 20 C 0.08 2.56 10.82 127.77 1.38 3.94 16 21 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.26 15.33 6.70 -92.71 -0.62 14.71 16 27 H 0.17 5.39 7.61 -2.91 -0.02 5.37 16 28 H 0.23 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.09 3.06 6.32 -2.39 -0.02 3.05 16 Total: -1.00 -68.21 269.04 6.11 -62.10 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.27 Total: 13.22 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.56 Total: -23.83 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.73 Total: -77.67 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Total: -68.21 6.11 -62.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160229302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.905 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds