Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47122 * 2 1 4 4 H 1.08996 * 109.47711 * 304.99909 * 3 2 1 5 5 C 1.50700 * 109.47120 * 184.99753 * 3 2 1 6 6 H 1.07994 * 120.00656 * 240.00384 * 5 3 2 7 7 C 1.37885 * 119.99614 * 60.00584 * 5 3 2 8 8 N 1.31513 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99636 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47273 * 89.99769 * 9 7 5 11 11 H 1.48506 * 109.46927 * 209.99516 * 9 7 5 12 12 H 1.48500 * 109.47225 * 329.99246 * 9 7 5 13 13 C 1.50706 * 109.47165 * 65.00498 * 3 2 1 14 14 O 1.21351 * 120.00221 * 94.99611 * 13 3 2 15 15 C 1.46292 * 119.99523 * 274.99896 * 13 3 2 16 16 C 1.38837 * 126.93674 * 359.96980 * 15 13 3 17 17 C 1.39524 * 105.33579 * 180.02562 * 16 15 13 18 18 N 1.30927 * 107.94579 * 0.24485 * 17 16 15 19 19 N 1.28446 * 111.01728 * 359.58479 * 18 17 16 20 20 C 1.46500 * 125.21184 * 180.15312 * 19 18 17 21 21 H 1.09005 * 109.46834 * 59.99675 * 1 2 3 22 22 H 1.08999 * 109.47591 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47439 * 299.99925 * 1 2 3 24 24 H 1.08999 * 109.46956 * 240.00292 * 2 1 3 25 25 H 1.08994 * 109.46706 * 120.00796 * 2 1 3 26 26 H 0.96998 * 119.99846 * 180.02562 * 8 7 5 27 27 H 1.07999 * 127.33413 * 0.02562 * 16 15 13 28 28 H 1.08002 * 126.02397 * 179.97438 * 17 16 15 29 29 H 1.08998 * 109.46963 * 270.30517 * 20 19 18 30 30 H 1.08995 * 109.47531 * 30.30797 * 20 19 18 31 31 H 1.09002 * 109.46691 * 150.31365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8799 -1.3811 10 1 6.5538 -0.3521 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6889 13 6 1.6414 2.1162 1.2878 14 8 2.4164 2.1482 2.2210 15 6 0.3201 2.7315 1.4128 16 6 -0.6729 2.7795 0.4437 17 6 -1.7336 3.4659 1.0359 18 7 -1.3741 3.7923 2.2518 19 7 -0.1862 3.3765 2.5083 20 6 0.5205 3.5688 3.7771 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5139 0.8899 26 1 3.8292 -0.0617 -2.9496 27 1 -0.6330 2.3723 -0.5558 28 1 -2.6820 3.6922 0.5714 29 1 1.0771 4.5054 3.7446 30 1 -0.2010 3.6030 4.5933 31 1 1.2114 2.7411 3.9371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160229445.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = 15.401754 kcal Electronic energy + Delta-G solvation = -15378.943888 eV Core-core repulsion = 12854.551076 eV Total energy + Delta-G solvation = -2524.392812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.42126 -40.09346 -36.44601 -34.32021 -33.69372 -31.63183 -29.69145 -28.03145 -26.09208 -24.06934 -23.10355 -21.47780 -20.12654 -18.59340 -17.83618 -17.23992 -16.94780 -16.15858 -15.86864 -15.39508 -14.67713 -14.54553 -14.52247 -13.95730 -13.71339 -13.43281 -13.25357 -13.18578 -12.81676 -12.56287 -12.12055 -11.95982 -11.79105 -11.53408 -10.97999 -10.55192 -10.31516 -10.12740 -9.83178 -8.14356 -6.26654 0.07764 1.41026 1.42443 1.51948 1.58709 1.63731 2.07956 2.42252 3.13033 3.24922 3.65868 4.22892 4.25619 4.35528 4.45522 4.51526 4.56921 4.61611 4.73547 4.87509 4.97501 5.10498 5.32967 5.36142 5.56937 5.63635 5.72585 5.80417 5.96747 6.22586 6.69241 6.80644 7.09613 7.40359 8.90282 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038377 B = 0.008769 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.436156 B = 3192.451153 C = 3592.142740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C 0.022 3.978 4 H 0.048 0.952 5 C -0.537 4.537 6 H 0.046 0.954 7 C 0.025 3.975 8 N -0.904 5.904 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.277 1.277 13 C 0.432 3.568 14 O -0.497 6.497 15 C -0.087 4.087 16 C -0.163 4.163 17 C -0.007 4.007 18 N -0.296 5.296 19 N -0.275 5.275 20 C 0.081 3.919 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.083 0.917 25 H 0.020 0.980 26 H 0.266 0.734 27 H 0.175 0.825 28 H 0.224 0.776 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 3.469 4.759 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C 0.003 3.997 4 H 0.066 0.934 5 C -0.575 4.575 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.543 5.543 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.202 1.202 13 C 0.312 3.688 14 O -0.373 6.373 15 C -0.212 4.212 16 C -0.191 4.191 17 C -0.182 4.182 18 N -0.131 5.131 19 N -0.064 5.064 20 C -0.058 4.058 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.192 0.808 28 H 0.240 0.760 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.736 3.958 6.191 11.416 hybrid contribution 1.481 -0.469 -0.850 1.771 sum -7.255 3.489 5.341 9.661 Atomic orbital electron populations 1.22044 0.95275 1.01400 1.01430 1.21332 0.95006 0.96296 1.01405 1.19011 0.96151 0.94402 0.90168 0.93413 1.21262 0.91704 1.38883 1.05627 0.93537 1.25547 1.02271 0.94584 0.95130 1.69928 1.36301 1.38354 1.09669 0.85644 0.80723 0.78371 0.77453 1.20192 1.19975 1.20183 1.22518 0.82246 0.73892 0.90179 1.90346 1.53359 1.52093 1.41514 1.22629 0.99378 1.08068 0.91143 1.22782 0.92481 1.03109 1.00732 1.24166 1.01959 1.01531 0.90531 1.73086 0.98358 1.20964 1.20645 1.46039 1.10146 1.37765 1.12449 1.22436 0.97603 1.04741 0.81048 0.91632 0.92634 0.93431 0.89883 0.96069 0.92462 0.80787 0.76004 0.89201 0.86395 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.38 71.98 0.60 -4.54 16 2 C -0.10 -4.68 5.23 30.59 0.16 -4.52 16 3 C 0.02 1.10 1.85 -12.29 -0.02 1.07 16 4 H 0.05 2.40 7.53 -2.39 -0.02 2.38 16 5 C -0.54 -30.08 8.33 25.60 0.21 -29.87 16 6 H 0.05 2.74 7.03 -2.91 -0.02 2.72 16 7 C 0.02 1.35 5.29 84.66 0.45 1.79 16 8 N -0.90 -49.36 11.29 21.45 0.24 -49.12 16 9 Si 0.95 43.63 29.54 68.60 2.03 45.65 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.43 19.56 5.88 27.78 0.16 19.73 16 14 O -0.50 -24.27 14.15 -3.25 -0.05 -24.32 16 15 C -0.09 -3.29 5.84 40.60 0.24 -3.05 16 16 C -0.16 -5.17 8.18 22.72 0.19 -4.98 16 17 C -0.01 -0.20 12.02 85.14 1.02 0.82 16 18 N -0.30 -9.20 11.90 -57.20 -0.68 -9.88 16 19 N -0.28 -9.24 3.76 -356.36 -1.34 -10.58 16 20 C 0.08 2.21 10.82 127.77 1.38 3.59 16 21 H 0.06 2.15 6.76 -2.38 -0.02 2.14 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.05 1.65 5.32 -2.39 -0.01 1.64 16 24 H 0.08 4.21 5.95 -2.39 -0.01 4.19 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 27 H 0.17 5.13 6.05 -2.91 -0.02 5.11 16 28 H 0.22 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.09 2.82 6.32 -2.39 -0.02 2.81 16 Total: -1.00 -63.78 257.68 5.73 -58.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.13 Total: 10.14 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 4.39 Total: -19.95 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.78 Total: -69.58 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.78 5.73 -58.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160229445.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.450 kcal (2) G-P(sol) polarization free energy of solvation -63.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds