Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41599 * 113.99994 * 2 1 4 4 C 1.46497 * 120.00243 * 270.00053 * 3 2 1 5 5 C 1.39855 * 119.99395 * 90.00527 * 3 2 1 6 6 C 1.39609 * 119.83378 * 180.02562 * 5 3 2 7 7 C 1.38055 * 120.54824 * 179.97438 * 6 5 3 8 8 C 1.38743 * 120.21811 * 0.25573 * 7 6 5 9 9 N 1.38871 * 120.16178 * 179.74895 * 8 7 6 10 10 C 1.41565 * 119.67360 * 359.51554 * 8 7 6 11 11 C 1.41031 * 120.26533 * 180.21010 * 10 8 7 12 12 H 1.07998 * 119.99932 * 25.81984 * 11 10 8 13 13 C 1.39888 * 119.99805 * 205.81548 * 11 10 8 14 14 N 1.30899 * 119.99780 * 15.35448 * 13 11 10 15 15 Si 1.86803 * 119.99888 * 195.35386 * 13 11 10 16 16 H 1.48503 * 109.47067 * 60.00114 * 15 13 11 17 17 H 1.48492 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47188 * 300.00202 * 15 13 11 19 19 C 1.37998 * 119.84119 * 0.02562 * 5 3 2 20 20 H 1.08998 * 109.47377 * 59.99412 * 1 2 3 21 21 H 1.09007 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46811 * 299.99429 * 1 2 3 23 23 H 1.08991 * 109.47265 * 270.00238 * 4 3 2 24 24 H 1.09001 * 109.46720 * 30.00700 * 4 3 2 25 25 H 1.09004 * 109.47147 * 149.99935 * 4 3 2 26 26 H 1.07999 * 119.72800 * 359.97403 * 6 5 3 27 27 H 1.07998 * 119.89455 * 179.97438 * 7 6 5 28 28 H 0.96993 * 119.99899 * 359.97438 * 9 8 7 29 29 H 0.96992 * 119.99596 * 179.97438 * 9 8 7 30 30 H 0.97001 * 119.99957 * 180.02562 * 14 13 11 31 31 H 1.07993 * 120.12021 * 359.97438 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2894 1.9322 1.2113 6 6 2.8568 3.2078 1.2073 7 6 3.1431 3.8521 2.3943 8 6 2.8739 3.2340 3.6069 9 7 3.1672 3.8809 4.8002 10 6 2.2941 1.9425 3.6218 11 6 2.0111 1.3045 4.8473 12 1 1.8318 1.8940 5.7342 13 6 1.9626 -0.0919 4.9139 14 7 2.4646 -0.8113 3.9423 15 14 1.1817 -0.9300 6.3894 16 1 -0.2403 -0.5161 6.4986 17 1 1.2561 -2.4032 6.2187 18 1 1.9077 -0.5369 7.6237 19 6 2.0080 1.2985 2.4044 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 3.3155 1.7108 -1.5833 24 1 1.5938 1.6337 -2.0283 25 1 2.2208 3.0419 -1.1383 26 1 3.0734 3.6947 0.2680 27 1 3.5823 4.8386 2.3790 28 1 3.5616 4.7670 4.7872 29 1 2.9777 3.4467 5.6465 30 1 2.4306 -1.7796 3.9883 31 1 1.5687 0.3119 2.4035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166379915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = 39.376088 kcal Electronic energy + Delta-G solvation = -15251.322142 eV Core-core repulsion = 12727.968935 eV Total energy + Delta-G solvation = -2523.353207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.11958 -36.62565 -33.91382 -33.38345 -31.32689 -29.38297 -27.54034 -26.36406 -24.85630 -23.43606 -21.06132 -19.60752 -17.32948 -16.60035 -15.71983 -15.38218 -14.93867 -14.81177 -14.64535 -13.60590 -13.01446 -12.82452 -12.52585 -12.20515 -11.85649 -11.76319 -11.33444 -11.23901 -11.07018 -10.97833 -10.36009 -9.97561 -9.73448 -9.56173 -9.32403 -9.03457 -7.75719 -7.23205 -6.57222 -5.59186 -4.06070 2.90635 2.94774 3.13938 3.15977 3.30153 3.42322 4.04474 4.79871 5.29850 5.41429 5.70935 5.77308 5.81524 5.87950 5.97362 6.12594 6.14835 6.34590 6.60200 7.08483 7.13995 7.32823 7.42382 7.66853 7.83842 7.96652 8.13408 8.43228 8.63040 8.81075 8.92431 8.99782 9.24411 9.31298 10.40142 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.011848 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.805910 B = 2362.673644 C = 3390.524786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.138 6.138 3 N -0.512 5.512 4 C 0.116 3.884 5 C 0.171 3.829 6 C -0.251 4.251 7 C -0.153 4.153 8 C 0.089 3.911 9 N -0.888 5.888 10 C 0.091 3.909 11 C -0.465 4.465 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.792 5.792 15 Si 0.902 3.098 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.188 4.188 20 H 0.035 0.965 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.375 0.625 29 H 0.389 0.611 30 H 0.277 0.723 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 2.781 -4.102 5.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.143 6.143 3 N -0.275 5.275 4 C -0.026 4.026 5 C 0.077 3.923 6 C -0.275 4.275 7 C -0.177 4.177 8 C -0.012 4.012 9 N -0.430 5.430 10 C 0.086 3.914 11 C -0.495 4.495 12 H 0.089 0.911 13 C -0.142 4.142 14 N -0.418 5.418 15 Si 0.727 3.273 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.212 4.212 20 H 0.054 0.946 21 H 0.106 0.894 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.200 0.800 29 H 0.217 0.783 30 H 0.088 0.912 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.344 2.232 -4.359 5.430 hybrid contribution -0.566 -0.329 0.864 1.084 sum -2.910 1.903 -3.495 4.930 Atomic orbital electron populations 1.23188 0.84525 1.02055 1.00350 1.90635 1.18018 1.09096 1.96509 1.47990 1.65842 1.10156 1.03497 1.21514 0.99563 0.96746 0.84753 1.17622 0.99502 0.91245 0.83895 1.19577 1.16404 0.95233 0.96279 1.19652 1.08179 0.98701 0.91171 1.17902 1.02877 0.94965 0.85481 1.41815 1.75382 1.20025 1.05810 1.17031 0.91634 0.89388 0.93359 1.19091 1.44009 0.90989 0.95461 0.91084 1.25778 0.93458 0.97860 0.97062 1.69880 1.33227 1.07132 1.31520 0.86492 0.80599 0.78174 0.82064 1.19185 1.20548 1.19324 1.20650 1.09551 1.02129 0.88891 0.94631 0.89395 0.93000 0.93946 0.92786 0.91104 0.89156 0.89350 0.80041 0.78276 0.91220 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 11.44 101.05 1.16 1.12 16 2 O -0.14 -3.00 10.50 -11.47 -0.12 -3.12 16 3 N -0.51 -11.13 3.51 -65.40 -0.23 -11.36 16 4 C 0.12 1.93 10.56 59.85 0.63 2.56 16 5 C 0.17 4.22 6.62 -83.77 -0.55 3.67 16 6 C -0.25 -5.76 9.20 -39.14 -0.36 -6.12 16 7 C -0.15 -3.50 9.86 -39.46 -0.39 -3.89 16 8 C 0.09 2.17 6.79 -83.22 -0.56 1.60 16 9 N -0.89 -18.16 8.98 32.75 0.29 -17.87 16 10 C 0.09 2.47 5.58 -106.65 -0.60 1.87 16 11 C -0.46 -12.35 8.49 -37.91 -0.32 -12.67 16 12 H 0.07 1.78 6.69 -52.49 -0.35 1.43 16 13 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 14 N -0.79 -21.41 10.88 55.55 0.60 -20.80 16 15 Si 0.90 19.18 29.59 -169.99 -5.03 14.15 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 C -0.19 -5.10 8.16 -38.75 -0.32 -5.42 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.09 6.18 -51.93 -0.32 0.77 16 26 H 0.09 1.81 6.11 -52.49 -0.32 1.49 16 27 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.37 6.43 8.83 -40.82 -0.36 6.07 16 29 H 0.39 7.81 7.05 -40.82 -0.29 7.52 16 30 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 31 H 0.13 3.66 5.45 -52.49 -0.29 3.38 16 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -30.08 264.03 -5.50 -35.59 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -3.60 Total: 14.86 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.40 Total: -15.43 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.67 Total: -50.03 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.12 Total: -3.12 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.08 -5.50 -35.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166379915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.963 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds