Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41599 * 113.99994 * 2 1 4 4 C 1.46497 * 120.00243 * 270.00053 * 3 2 1 5 5 C 1.39855 * 119.99395 * 90.00527 * 3 2 1 6 6 C 1.39609 * 119.83378 * 180.02562 * 5 3 2 7 7 C 1.38055 * 120.54824 * 179.97438 * 6 5 3 8 8 C 1.38743 * 120.21811 * 0.25573 * 7 6 5 9 9 N 1.38871 * 120.16178 * 179.74895 * 8 7 6 10 10 C 1.41565 * 119.67360 * 359.51554 * 8 7 6 11 11 C 1.41031 * 120.26533 * 180.21010 * 10 8 7 12 12 H 1.07998 * 119.99932 * 25.81984 * 11 10 8 13 13 C 1.39888 * 119.99805 * 205.81548 * 11 10 8 14 14 N 1.30899 * 119.99780 * 15.35448 * 13 11 10 15 15 Si 1.86803 * 119.99888 * 195.35386 * 13 11 10 16 16 H 1.48503 * 109.47067 * 60.00114 * 15 13 11 17 17 H 1.48492 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47188 * 300.00202 * 15 13 11 19 19 C 1.37998 * 119.84119 * 0.02562 * 5 3 2 20 20 H 1.08998 * 109.47377 * 59.99412 * 1 2 3 21 21 H 1.09007 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46811 * 299.99429 * 1 2 3 23 23 H 1.08991 * 109.47265 * 270.00238 * 4 3 2 24 24 H 1.09001 * 109.46720 * 30.00700 * 4 3 2 25 25 H 1.09004 * 109.47147 * 149.99935 * 4 3 2 26 26 H 1.07999 * 119.72800 * 359.97403 * 6 5 3 27 27 H 1.07998 * 119.89455 * 179.97438 * 7 6 5 28 28 H 0.96993 * 119.99899 * 359.97438 * 9 8 7 29 29 H 0.96992 * 119.99596 * 179.97438 * 9 8 7 30 30 H 0.97001 * 119.99957 * 180.02562 * 14 13 11 31 31 H 1.07993 * 120.12021 * 359.97438 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2894 1.9322 1.2113 6 6 2.8568 3.2078 1.2073 7 6 3.1431 3.8521 2.3943 8 6 2.8739 3.2340 3.6069 9 7 3.1672 3.8809 4.8002 10 6 2.2941 1.9425 3.6218 11 6 2.0111 1.3045 4.8473 12 1 1.8318 1.8940 5.7342 13 6 1.9626 -0.0919 4.9139 14 7 2.4646 -0.8113 3.9423 15 14 1.1817 -0.9300 6.3894 16 1 -0.2403 -0.5161 6.4986 17 1 1.2561 -2.4032 6.2187 18 1 1.9077 -0.5369 7.6237 19 6 2.0080 1.2985 2.4044 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 3.3155 1.7108 -1.5833 24 1 1.5938 1.6337 -2.0283 25 1 2.2208 3.0419 -1.1383 26 1 3.0734 3.6947 0.2680 27 1 3.5823 4.8386 2.3790 28 1 3.5616 4.7670 4.7872 29 1 2.9777 3.4467 5.6465 30 1 2.4306 -1.7796 3.9883 31 1 1.5687 0.3119 2.4035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166379915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = 19.593771 kcal Electronic energy + Delta-G solvation = -15252.179967 eV Core-core repulsion = 12727.968935 eV Total energy + Delta-G solvation = -2524.211032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88505 -38.28467 -35.66740 -35.19995 -32.95414 -31.27022 -29.21983 -27.83437 -26.72992 -25.03199 -22.93150 -21.38445 -19.12461 -18.33752 -17.48510 -17.08845 -16.59381 -16.38693 -16.36620 -15.20389 -14.61985 -14.32650 -14.20790 -13.97273 -13.57525 -13.45802 -12.96849 -12.86704 -12.71087 -12.62135 -12.10150 -11.81400 -11.45229 -11.21972 -11.08178 -10.92422 -9.41222 -9.15936 -8.47734 -7.37061 -6.01336 1.11253 1.37637 1.39788 1.49371 1.51311 1.60727 2.26567 2.90195 3.74258 3.87659 3.94936 4.37887 4.48223 4.52600 4.57677 4.67575 4.71095 4.81143 4.95959 5.23350 5.30810 5.43736 5.61081 5.85461 6.03365 6.16507 6.24541 6.53338 6.88087 7.01739 7.05705 7.13001 7.43365 7.66768 8.51527 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.011848 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.805910 B = 2362.673644 C = 3390.524786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.168 6.168 3 N -0.520 5.520 4 C 0.110 3.890 5 C 0.158 3.842 6 C -0.246 4.246 7 C -0.157 4.157 8 C 0.076 3.924 9 N -0.877 5.877 10 C 0.054 3.946 11 C -0.492 4.492 12 H 0.077 0.923 13 C 0.031 3.969 14 N -0.831 5.831 15 Si 0.974 3.026 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.258 1.258 19 C -0.215 4.215 20 H 0.062 0.938 21 H 0.112 0.888 22 H 0.026 0.974 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.392 0.608 29 H 0.390 0.610 30 H 0.278 0.722 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 3.782 -4.601 6.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.172 6.172 3 N -0.283 5.283 4 C -0.030 4.030 5 C 0.062 3.938 6 C -0.270 4.270 7 C -0.181 4.181 8 C -0.026 4.026 9 N -0.421 5.421 10 C 0.049 3.951 11 C -0.523 4.523 12 H 0.095 0.905 13 C -0.182 4.182 14 N -0.458 5.458 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.182 1.182 19 C -0.239 4.239 20 H 0.081 0.919 21 H 0.130 0.870 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.220 0.780 29 H 0.218 0.782 30 H 0.089 0.911 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.452 3.262 -4.876 6.359 hybrid contribution -0.509 -0.558 0.891 1.167 sum -2.960 2.705 -3.986 5.654 Atomic orbital electron populations 1.23292 0.82426 1.03698 1.00316 1.90549 1.20245 1.09815 1.96603 1.48231 1.66025 1.09902 1.04148 1.21800 1.00771 0.97197 0.83215 1.17833 0.99432 0.92057 0.84499 1.19991 1.14702 0.94482 0.97833 1.20068 1.07483 0.99962 0.90589 1.18089 1.02686 0.94526 0.87302 1.41694 1.74973 1.20637 1.04771 1.17421 0.92976 0.91055 0.93696 1.19375 1.45286 0.91870 0.95789 0.90517 1.26625 0.93423 0.98250 0.99938 1.69996 1.34791 1.07310 1.33736 0.85379 0.79498 0.76994 0.78514 1.18883 1.20111 1.18243 1.20583 1.11206 1.01676 0.90439 0.91931 0.86966 0.95550 0.93164 0.90144 0.89629 0.85895 0.86069 0.77982 0.78172 0.91150 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 11.44 113.37 1.30 1.33 16 2 O -0.17 -7.30 10.50 -38.78 -0.41 -7.70 16 3 N -0.52 -22.19 3.51 -360.84 -1.26 -23.46 16 4 C 0.11 3.37 10.56 127.77 1.35 4.72 16 5 C 0.16 7.75 6.62 38.13 0.25 8.00 16 6 C -0.25 -10.82 9.20 22.56 0.21 -10.62 16 7 C -0.16 -6.87 9.86 22.35 0.22 -6.65 16 8 C 0.08 3.68 6.79 38.97 0.26 3.95 16 9 N -0.88 -34.89 8.98 -50.30 -0.45 -35.34 16 10 C 0.05 2.97 5.58 -21.18 -0.12 2.85 16 11 C -0.49 -26.78 8.49 23.35 0.20 -26.59 16 12 H 0.08 3.90 6.69 -2.91 -0.02 3.88 16 13 C 0.03 1.61 5.18 85.23 0.44 2.05 16 14 N -0.83 -46.62 10.88 21.82 0.24 -46.38 16 15 Si 0.97 40.02 29.59 68.60 2.03 42.05 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 C -0.21 -11.99 8.16 22.81 0.19 -11.80 16 20 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 22 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.09 2.35 6.18 -2.38 -0.01 2.33 16 26 H 0.12 4.50 6.11 -2.91 -0.02 4.48 16 27 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.39 12.65 8.83 -92.71 -0.82 11.83 16 29 H 0.39 15.44 7.05 -92.71 -0.65 14.79 16 30 H 0.28 14.47 8.30 -92.71 -0.77 13.70 16 31 H 0.10 6.17 5.45 -2.91 -0.02 6.15 16 Total: -1.00 -66.32 264.03 4.13 -62.18 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.31 Total: 41.41 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 4.30 Total: -32.76 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -1.48 Total: -105.18 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.41 Total: -7.70 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -66.32 4.13 -62.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166379915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.776 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds