Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 F 1.39904 * 109.47044 * 119.99368 * 2 1 3 5 5 C 1.52994 * 109.47026 * 239.99275 * 2 1 3 6 6 C 1.52999 * 109.46879 * 175.00129 * 5 2 1 7 7 C 1.50706 * 109.47209 * 179.97438 * 6 5 2 8 8 C 1.38639 * 119.74839 * 90.00005 * 7 6 5 9 9 C 1.37620 * 120.24897 * 180.23652 * 8 7 6 10 10 C 1.40715 * 119.74131 * 359.51904 * 9 8 7 11 11 C 1.41399 * 120.24183 * 180.22985 * 10 9 8 12 12 H 1.07996 * 120.00044 * 204.52621 * 11 10 9 13 13 C 1.39950 * 119.99773 * 24.53568 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.71280 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.70913 * 13 11 10 16 16 H 1.48506 * 109.46742 * 59.99979 * 15 13 11 17 17 H 1.48505 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47336 * 300.00007 * 15 13 11 19 19 C 1.40715 * 119.51261 * 0.47567 * 10 9 8 20 20 C 1.37609 * 119.74608 * 359.75586 * 19 10 9 21 21 H 1.08996 * 109.47486 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46871 * 300.00782 * 1 2 3 23 23 H 1.09005 * 109.46873 * 60.00277 * 1 2 3 24 24 H 1.08997 * 109.47240 * 55.00713 * 5 2 1 25 25 H 1.08996 * 109.47326 * 295.00252 * 5 2 1 26 26 H 1.08994 * 109.47411 * 60.00441 * 6 5 2 27 27 H 1.09001 * 109.47802 * 299.99725 * 6 5 2 28 28 H 1.08000 * 119.87572 * 359.95847 * 8 7 6 29 29 H 1.07993 * 120.12561 * 179.72165 * 9 8 7 30 30 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.12510 * 179.73128 * 19 10 9 32 32 H 1.08002 * 119.87647 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6594 1.1424 5 6 2.0400 -0.7214 -1.2491 6 6 3.5648 -0.6134 -1.3135 7 6 4.0673 -1.3245 -2.5436 8 6 4.1977 -0.6285 -3.7355 9 6 4.6510 -1.2689 -4.8662 10 6 4.9920 -2.6328 -4.8067 11 6 5.4634 -3.2999 -5.9609 12 1 5.3523 -4.3706 -6.0489 13 6 6.0741 -2.5729 -6.9890 14 7 6.5228 -1.3657 -6.7592 15 14 6.2487 -3.3263 -8.6894 16 1 4.9030 -3.6488 -9.2284 17 1 6.9244 -2.3598 -9.5920 18 1 7.0569 -4.5688 -8.5997 19 6 4.8556 -3.3291 -3.5916 20 6 4.3959 -2.6696 -2.4747 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 1.6055 -0.2619 -2.1369 25 1 1.7516 -1.7716 -1.2054 26 1 3.9994 -1.0729 -0.4258 27 1 3.8533 0.4368 -1.3573 28 1 3.9385 0.4190 -3.7779 29 1 4.7476 -0.7259 -5.7947 30 1 6.9457 -0.8616 -7.4719 31 1 5.1104 -4.3771 -3.5358 32 1 4.2900 -3.2021 -1.5410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213546924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = -76.856296 kcal Electronic energy + Delta-G solvation = -14353.600503 eV Core-core repulsion = 11805.287120 eV Total energy + Delta-G solvation = -2548.313383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.51740 -39.56744 -36.39432 -35.01479 -32.56257 -31.17410 -30.01781 -27.06838 -24.37509 -22.87789 -22.16543 -21.43018 -19.21524 -17.50699 -17.19545 -16.47871 -15.97753 -15.80301 -15.55580 -15.36260 -14.29448 -14.09400 -13.85611 -13.79415 -13.43625 -13.12998 -13.04607 -12.89581 -12.74168 -12.30163 -12.25357 -11.84610 -11.70466 -11.54132 -11.26321 -11.13985 -10.96289 -9.35821 -9.16878 -8.63062 -6.32427 0.97224 1.13666 1.37554 1.48850 1.53813 2.20966 2.71817 3.63255 3.77741 3.88096 3.96563 4.07664 4.35050 4.44665 4.56286 4.64661 4.73274 4.86101 4.89871 4.96755 5.08575 5.16550 5.23206 5.29981 5.36773 5.44295 5.49653 5.72081 6.00643 6.10760 6.26639 6.40299 6.71051 6.94865 7.04829 8.33973 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.064915 B = 0.005222 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.230983 B = 5360.988125 C = 5461.123523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.098 0.902 4 F -0.233 7.233 5 C -0.134 4.134 6 C -0.053 4.053 7 C -0.200 4.200 8 C -0.102 4.102 9 C -0.189 4.189 10 C 0.074 3.926 11 C -0.506 4.506 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.827 5.827 15 Si 0.982 3.018 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.244 4.244 20 C -0.094 4.094 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.288 0.712 31 H 0.093 0.907 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.122 3.970 6.477 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.047 3.953 3 H 0.116 0.884 4 F -0.214 7.214 5 C -0.171 4.171 6 C -0.091 4.091 7 C -0.201 4.201 8 C -0.120 4.120 9 C -0.209 4.209 10 C 0.072 3.928 11 C -0.536 4.536 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.454 5.454 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.190 1.190 18 H -0.185 1.185 19 C -0.263 4.263 20 C -0.112 4.112 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.979 4.154 6.407 11.044 hybrid contribution 0.479 -0.505 -0.795 1.057 sum -7.500 3.648 5.612 10.053 Atomic orbital electron populations 1.22361 0.92946 1.03613 1.04385 1.21819 0.95834 0.96564 0.81042 0.88412 1.92764 1.90691 1.83949 1.54011 1.22175 0.95808 1.01353 0.97806 1.20243 0.94893 0.99549 0.94394 1.19509 1.10670 0.94260 0.95703 1.20831 0.99725 0.98466 0.92950 1.21310 1.05385 0.96038 0.98120 1.17976 0.89354 0.92925 0.92522 1.19811 1.35927 0.95576 1.02240 0.90920 1.26748 0.91970 0.94909 1.04253 1.69874 1.27723 1.12242 1.35517 0.85257 0.79528 0.79012 0.75919 1.18494 1.19024 1.18460 1.21175 1.12041 0.99381 0.93733 1.20724 0.98958 0.94556 0.96949 0.91976 0.90595 0.89298 0.89742 0.92120 0.92346 0.91264 0.87125 0.88131 0.90147 0.88862 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.65 71.98 0.69 -2.34 16 2 C 0.08 1.85 3.96 30.59 0.12 1.97 16 3 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 4 F -0.23 -6.45 16.76 44.97 0.75 -5.70 16 5 C -0.13 -3.65 4.96 30.59 0.15 -3.49 16 6 C -0.05 -1.74 5.25 29.85 0.16 -1.59 16 7 C -0.20 -8.49 5.16 -19.67 -0.10 -8.59 16 8 C -0.10 -4.67 9.67 22.22 0.21 -4.46 16 9 C -0.19 -10.14 8.70 22.73 0.20 -9.94 16 10 C 0.07 4.15 5.57 -21.29 -0.12 4.03 16 11 C -0.51 -28.19 9.06 23.46 0.21 -27.98 16 12 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 13 C 0.04 1.84 5.14 85.26 0.44 2.28 16 14 N -0.83 -44.16 10.95 21.83 0.24 -43.92 16 15 Si 0.98 38.84 29.59 68.60 2.03 40.87 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 18 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 19 C -0.24 -12.47 9.80 22.73 0.22 -12.25 16 20 C -0.09 -4.23 9.67 22.22 0.21 -4.02 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.90 7.87 -2.39 -0.02 1.89 16 27 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 28 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 30 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 31 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -60.37 276.55 6.51 -53.85 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 1.09 Total: 21.26 kcal Atomic # 6 Polarization: -68.77 SS G_CDS: 2.40 Total: -66.37 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.24 Total: -43.92 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.75 Total: -5.70 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -60.37 6.51 -53.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213546924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.002 kcal (2) G-P(sol) polarization free energy of solvation -60.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds