Wall clock time and date at job start Mon Mar 30 2020 02:56:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.46719 * 2 1
4 4 F 1.39901 * 109.47337 * 239.99753 * 2 1 3
5 5 C 1.52996 * 109.46754 * 119.99759 * 2 1 3
6 6 C 1.53000 * 109.47045 * 184.99992 * 5 2 1
7 7 C 1.50707 * 109.47378 * 179.97438 * 6 5 2
8 8 C 1.37643 * 120.12639 * 265.31121 * 7 6 5
9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6
10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7
11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8
12 12 C 1.40688 * 120.12508 * 84.99880 * 7 6 5
13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6
14 14 H 1.08005 * 119.99206 * 334.30257 * 13 12 7
15 15 C 1.39936 * 120.00319 * 154.30692 * 13 12 7
16 16 N 1.30829 * 120.00392 * 334.60349 * 15 13 12
17 17 Si 1.86800 * 119.99991 * 154.60526 * 15 13 12
18 18 H 1.48500 * 109.47053 * 180.02562 * 17 15 13
19 19 H 1.48502 * 109.46913 * 299.99667 * 17 15 13
20 20 H 1.48493 * 109.47308 * 59.99700 * 17 15 13
21 21 H 1.08996 * 109.47517 * 300.00443 * 1 2 3
22 22 H 1.09004 * 109.47099 * 60.00270 * 1 2 3
23 23 H 1.08997 * 109.47370 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47212 * 65.00467 * 5 2 1
25 25 H 1.09003 * 109.47571 * 304.99999 * 5 2 1
26 26 H 1.09001 * 109.46727 * 60.00178 * 6 5 2
27 27 H 1.08991 * 109.47343 * 300.00259 * 6 5 2
28 28 H 1.07998 * 119.87840 * 0.02562 * 8 7 6
29 29 H 1.07996 * 119.74749 * 179.68975 * 9 8 7
30 30 H 1.08000 * 119.87393 * 180.02562 * 10 9 8
31 31 H 1.07996 * 120.12941 * 180.02562 * 11 10 9
32 32 H 0.97000 * 119.99090 * 354.17960 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 9 1.9964 -0.6595 -1.1422
5 6 2.0399 -0.7212 1.2493
6 6 3.5647 -0.6133 1.3138
7 6 4.0670 -1.3231 2.5447
8 6 4.2912 -0.6183 3.7055
9 6 4.7594 -1.2676 4.8371
10 6 5.0007 -2.6329 4.8160
11 6 4.7777 -3.3585 3.6684
12 6 4.3023 -2.7098 2.5135
13 6 4.0688 -3.4455 1.3287
14 1 3.3529 -3.0878 0.6034
15 6 4.7651 -4.6368 1.0960
16 7 5.9316 -4.8326 1.6550
17 14 4.0292 -5.9475 -0.0130
18 1 4.9568 -7.1042 -0.0953
19 1 2.7285 -6.3956 0.5461
20 1 3.8168 -5.3850 -1.3708
21 1 -0.3634 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 1.7516 -1.7715 1.2056
25 1 1.6053 -0.2617 2.1370
26 1 3.8530 0.4370 1.3574
27 1 3.9994 -1.0727 0.4262
28 1 4.1060 0.4453 3.7334
29 1 4.9373 -0.7059 5.7422
30 1 5.3651 -3.1285 5.7036
31 1 4.9660 -4.4219 3.6543
32 1 6.3522 -4.1203 2.1616
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000213547097.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:32
Heat of formation + Delta-G solvation = -67.860627 kcal
Electronic energy + Delta-G solvation = -14960.843961 eV
Core-core repulsion = 12412.920660 eV
Total energy + Delta-G solvation = -2547.923301 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.112 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-47.21197 -37.99493 -34.41842 -33.80557 -31.28511 -29.20402 -27.87717 -25.12634
-23.37498 -20.93265 -20.86509 -19.64030 -17.68442 -16.27727 -15.20446 -14.79989
-14.66262 -14.39551 -14.04285 -13.71859 -12.64488 -12.43947 -12.33082 -12.19138
-11.98751 -11.90430 -11.57707 -11.16894 -10.92160 -10.59787 -10.41442 -10.30629
-10.28805 -10.16148 -9.49256 -9.27069 -8.91325 -7.55202 -7.49203 -7.09124
-4.38798 2.80369 2.85267 3.19964 3.31728 3.39390 4.06211 4.60029
4.88293 4.97236 5.12750 5.23836 5.50884 5.69688 5.78465 6.01808
6.07159 6.18842 6.24970 6.28974 6.40638 6.42596 6.61585 6.86508
6.94428 7.06976 7.22203 7.46583 7.72984 7.87002 7.91242 7.97318
8.24417 8.36759 8.81647 8.95177 10.10210
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.017945 B = 0.012343 C = 0.007828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1559.984358 B = 2267.945579 C = 3575.996896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.086 3.914
3 H 0.075 0.925
4 F -0.215 7.215
5 C -0.138 4.138
6 C -0.051 4.051
7 C -0.198 4.198
8 C -0.080 4.080
9 C -0.256 4.256
10 C -0.089 4.089
11 C -0.220 4.220
12 C 0.103 3.897
13 C -0.518 4.518
14 H 0.080 0.920
15 C 0.040 3.960
16 N -0.799 5.799
17 Si 1.060 2.940
18 H -0.275 1.275
19 H -0.275 1.275
20 H -0.275 1.275
21 H 0.071 0.929
22 H 0.060 0.940
23 H 0.066 0.934
24 H 0.079 0.921
25 H 0.070 0.930
26 H 0.044 0.956
27 H 0.071 0.929
28 H 0.087 0.913
29 H 0.086 0.914
30 H 0.087 0.913
31 H 0.104 0.896
32 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.740 5.538 -2.043 8.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.050 3.950
3 H 0.093 0.907
4 F -0.196 7.196
5 C -0.176 4.176
6 C -0.089 4.089
7 C -0.199 4.199
8 C -0.098 4.098
9 C -0.276 4.276
10 C -0.107 4.107
11 C -0.240 4.240
12 C 0.100 3.900
13 C -0.546 4.546
14 H 0.098 0.902
15 C -0.182 4.182
16 N -0.422 5.422
17 Si 0.884 3.116
18 H -0.200 1.200
19 H -0.201 1.201
20 H -0.200 1.200
21 H 0.090 0.910
22 H 0.079 0.921
23 H 0.086 0.914
24 H 0.097 0.903
25 H 0.088 0.912
26 H 0.062 0.938
27 H 0.089 0.911
28 H 0.105 0.895
29 H 0.104 0.896
30 H 0.105 0.895
31 H 0.122 0.878
32 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -6.421 3.976 -2.649 8.003
hybrid contribution -0.176 1.572 0.760 1.755
sum -6.597 5.549 -1.889 8.824
Atomic orbital electron populations
1.22377 0.95163 1.03418 1.02640 1.21638 0.94014 0.96058 0.83279
0.90708 1.92807 1.90296 1.83465 1.53010 1.22216 0.97900 1.01997
0.95494 1.20120 0.93079 0.97829 0.97837 1.19558 1.12214 0.93606
0.94518 1.20434 0.99097 0.97040 0.93258 1.20289 1.14515 0.94835
0.97938 1.20599 0.99300 0.94146 0.96686 1.21167 1.10789 0.98739
0.93271 1.17505 0.89330 0.90536 0.92624 1.20591 1.22653 1.06736
1.04582 0.90150 1.26965 0.93995 0.99517 0.97744 1.70452 1.11940
1.37296 1.22493 0.83708 0.76499 0.75452 0.75947 1.19967 1.20056
1.19990 0.91019 0.92068 0.91442 0.90265 0.91170 0.93765 0.91075
0.89511 0.89575 0.89489 0.87796 0.88756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.15 9.65 37.16 0.36 -1.80 16
2 C 0.09 1.29 3.96 -26.73 -0.11 1.19 16
3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
4 F -0.21 -3.88 16.76 2.25 0.04 -3.84 16
5 C -0.14 -2.44 4.86 -26.73 -0.13 -2.57 16
6 C -0.05 -1.05 4.60 -27.88 -0.13 -1.18 16
7 C -0.20 -4.69 5.19 -103.91 -0.54 -5.23 16
8 C -0.08 -1.79 9.66 -39.66 -0.38 -2.18 16
9 C -0.26 -5.80 10.05 -39.29 -0.39 -6.19 16
10 C -0.09 -2.10 10.02 -39.66 -0.40 -2.50 16
11 C -0.22 -5.72 7.95 -38.87 -0.31 -6.02 16
12 C 0.10 2.70 5.30 -106.82 -0.57 2.13 16
13 C -0.52 -13.61 8.05 -37.74 -0.30 -13.92 16
14 H 0.08 2.08 6.15 -52.48 -0.32 1.76 16
15 C 0.04 1.01 4.94 -17.34 -0.09 0.93 16
16 N -0.80 -21.47 12.31 55.55 0.68 -20.79 16
17 Si 1.06 22.07 30.00 -169.99 -5.10 16.97 16
18 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16
19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16
20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
24 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16
25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
26 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16
27 H 0.07 1.60 6.85 -51.93 -0.36 1.24 16
28 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16
29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16
30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16
31 H 0.10 2.78 6.49 -52.49 -0.34 2.44 16
32 H 0.30 8.27 6.68 -40.82 -0.27 8.00 16
LS Contribution 271.03 15.07 4.08 4.08
Total: -1.00 -27.58 271.03 -7.55 -35.13
By element:
Atomic # 1 Polarization: 10.05 SS G_CDS: -4.27 Total: 5.78 kcal
Atomic # 6 Polarization: -34.35 SS G_CDS: -2.98 Total: -37.34 kcal
Atomic # 7 Polarization: -21.47 SS G_CDS: 0.68 Total: -20.79 kcal
Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -5.10 Total: 16.97 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -27.58 -7.55 -35.13 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000213547097.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.731 kcal
(2) G-P(sol) polarization free energy of solvation -27.584 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds