Wall clock time and date at job start Mon Mar 30 2020 02:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46719 * 2 1 4 4 F 1.39901 * 109.47337 * 239.99753 * 2 1 3 5 5 C 1.52996 * 109.46754 * 119.99759 * 2 1 3 6 6 C 1.53000 * 109.47045 * 184.99992 * 5 2 1 7 7 C 1.50707 * 109.47378 * 179.97438 * 6 5 2 8 8 C 1.37643 * 120.12639 * 265.31121 * 7 6 5 9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6 10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7 11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8 12 12 C 1.40688 * 120.12508 * 84.99880 * 7 6 5 13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6 14 14 H 1.08005 * 119.99206 * 334.30257 * 13 12 7 15 15 C 1.39936 * 120.00319 * 154.30692 * 13 12 7 16 16 N 1.30829 * 120.00392 * 334.60349 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 154.60526 * 15 13 12 18 18 H 1.48500 * 109.47053 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.46913 * 299.99667 * 17 15 13 20 20 H 1.48493 * 109.47308 * 59.99700 * 17 15 13 21 21 H 1.08996 * 109.47517 * 300.00443 * 1 2 3 22 22 H 1.09004 * 109.47099 * 60.00270 * 1 2 3 23 23 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47212 * 65.00467 * 5 2 1 25 25 H 1.09003 * 109.47571 * 304.99999 * 5 2 1 26 26 H 1.09001 * 109.46727 * 60.00178 * 6 5 2 27 27 H 1.08991 * 109.47343 * 300.00259 * 6 5 2 28 28 H 1.07998 * 119.87840 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.74749 * 179.68975 * 9 8 7 30 30 H 1.08000 * 119.87393 * 180.02562 * 10 9 8 31 31 H 1.07996 * 120.12941 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99090 * 354.17960 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7212 1.2493 6 6 3.5647 -0.6133 1.3138 7 6 4.0670 -1.3231 2.5447 8 6 4.2912 -0.6183 3.7055 9 6 4.7594 -1.2676 4.8371 10 6 5.0007 -2.6329 4.8160 11 6 4.7777 -3.3585 3.6684 12 6 4.3023 -2.7098 2.5135 13 6 4.0688 -3.4455 1.3287 14 1 3.3529 -3.0878 0.6034 15 6 4.7651 -4.6368 1.0960 16 7 5.9316 -4.8326 1.6550 17 14 4.0292 -5.9475 -0.0130 18 1 4.9568 -7.1042 -0.0953 19 1 2.7285 -6.3956 0.5461 20 1 3.8168 -5.3850 -1.3708 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.7516 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1370 26 1 3.8530 0.4370 1.3574 27 1 3.9994 -1.0727 0.4262 28 1 4.1060 0.4453 3.7334 29 1 4.9373 -0.7059 5.7422 30 1 5.3651 -3.1285 5.7036 31 1 4.9660 -4.4219 3.6543 32 1 6.3522 -4.1203 2.1616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213547097.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:32 Heat of formation + Delta-G solvation = -67.860627 kcal Electronic energy + Delta-G solvation = -14960.843961 eV Core-core repulsion = 12412.920660 eV Total energy + Delta-G solvation = -2547.923301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.21197 -37.99493 -34.41842 -33.80557 -31.28511 -29.20402 -27.87717 -25.12634 -23.37498 -20.93265 -20.86509 -19.64030 -17.68442 -16.27727 -15.20446 -14.79989 -14.66262 -14.39551 -14.04285 -13.71859 -12.64488 -12.43947 -12.33082 -12.19138 -11.98751 -11.90430 -11.57707 -11.16894 -10.92160 -10.59787 -10.41442 -10.30629 -10.28805 -10.16148 -9.49256 -9.27069 -8.91325 -7.55202 -7.49203 -7.09124 -4.38798 2.80369 2.85267 3.19964 3.31728 3.39390 4.06211 4.60029 4.88293 4.97236 5.12750 5.23836 5.50884 5.69688 5.78465 6.01808 6.07159 6.18842 6.24970 6.28974 6.40638 6.42596 6.61585 6.86508 6.94428 7.06976 7.22203 7.46583 7.72984 7.87002 7.91242 7.97318 8.24417 8.36759 8.81647 8.95177 10.10210 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.012343 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.984358 B = 2267.945579 C = 3575.996896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.075 0.925 4 F -0.215 7.215 5 C -0.138 4.138 6 C -0.051 4.051 7 C -0.198 4.198 8 C -0.080 4.080 9 C -0.256 4.256 10 C -0.089 4.089 11 C -0.220 4.220 12 C 0.103 3.897 13 C -0.518 4.518 14 H 0.080 0.920 15 C 0.040 3.960 16 N -0.799 5.799 17 Si 1.060 2.940 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.275 1.275 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 5.538 -2.043 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.050 3.950 3 H 0.093 0.907 4 F -0.196 7.196 5 C -0.176 4.176 6 C -0.089 4.089 7 C -0.199 4.199 8 C -0.098 4.098 9 C -0.276 4.276 10 C -0.107 4.107 11 C -0.240 4.240 12 C 0.100 3.900 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.422 5.422 17 Si 0.884 3.116 18 H -0.200 1.200 19 H -0.201 1.201 20 H -0.200 1.200 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.421 3.976 -2.649 8.003 hybrid contribution -0.176 1.572 0.760 1.755 sum -6.597 5.549 -1.889 8.824 Atomic orbital electron populations 1.22377 0.95163 1.03418 1.02640 1.21638 0.94014 0.96058 0.83279 0.90708 1.92807 1.90296 1.83465 1.53010 1.22216 0.97900 1.01997 0.95494 1.20120 0.93079 0.97829 0.97837 1.19558 1.12214 0.93606 0.94518 1.20434 0.99097 0.97040 0.93258 1.20289 1.14515 0.94835 0.97938 1.20599 0.99300 0.94146 0.96686 1.21167 1.10789 0.98739 0.93271 1.17505 0.89330 0.90536 0.92624 1.20591 1.22653 1.06736 1.04582 0.90150 1.26965 0.93995 0.99517 0.97744 1.70452 1.11940 1.37296 1.22493 0.83708 0.76499 0.75452 0.75947 1.19967 1.20056 1.19990 0.91019 0.92068 0.91442 0.90265 0.91170 0.93765 0.91075 0.89511 0.89575 0.89489 0.87796 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.65 37.16 0.36 -1.80 16 2 C 0.09 1.29 3.96 -26.73 -0.11 1.19 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 F -0.21 -3.88 16.76 2.25 0.04 -3.84 16 5 C -0.14 -2.44 4.86 -26.73 -0.13 -2.57 16 6 C -0.05 -1.05 4.60 -27.88 -0.13 -1.18 16 7 C -0.20 -4.69 5.19 -103.91 -0.54 -5.23 16 8 C -0.08 -1.79 9.66 -39.66 -0.38 -2.18 16 9 C -0.26 -5.80 10.05 -39.29 -0.39 -6.19 16 10 C -0.09 -2.10 10.02 -39.66 -0.40 -2.50 16 11 C -0.22 -5.72 7.95 -38.87 -0.31 -6.02 16 12 C 0.10 2.70 5.30 -106.82 -0.57 2.13 16 13 C -0.52 -13.61 8.05 -37.74 -0.30 -13.92 16 14 H 0.08 2.08 6.15 -52.48 -0.32 1.76 16 15 C 0.04 1.01 4.94 -17.34 -0.09 0.93 16 16 N -0.80 -21.47 12.31 55.55 0.68 -20.79 16 17 Si 1.06 22.07 30.00 -169.99 -5.10 16.97 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 27 H 0.07 1.60 6.85 -51.93 -0.36 1.24 16 28 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.10 2.78 6.49 -52.49 -0.34 2.44 16 32 H 0.30 8.27 6.68 -40.82 -0.27 8.00 16 LS Contribution 271.03 15.07 4.08 4.08 Total: -1.00 -27.58 271.03 -7.55 -35.13 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.27 Total: 5.78 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: -2.98 Total: -37.34 kcal Atomic # 7 Polarization: -21.47 SS G_CDS: 0.68 Total: -20.79 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.10 Total: 16.97 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.58 -7.55 -35.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213547097.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.731 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds