Wall clock time and date at job start Mon Mar 30 2020 02:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46719 * 2 1 4 4 F 1.39901 * 109.47337 * 239.99753 * 2 1 3 5 5 C 1.52996 * 109.46754 * 119.99759 * 2 1 3 6 6 C 1.53000 * 109.47045 * 184.99992 * 5 2 1 7 7 C 1.50707 * 109.47378 * 179.97438 * 6 5 2 8 8 C 1.37643 * 120.12639 * 265.31121 * 7 6 5 9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6 10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7 11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8 12 12 C 1.40688 * 120.12508 * 84.99880 * 7 6 5 13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6 14 14 H 1.08005 * 119.99206 * 334.30257 * 13 12 7 15 15 C 1.39936 * 120.00319 * 154.30692 * 13 12 7 16 16 N 1.30829 * 120.00392 * 334.60349 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 154.60526 * 15 13 12 18 18 H 1.48500 * 109.47053 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.46913 * 299.99667 * 17 15 13 20 20 H 1.48493 * 109.47308 * 59.99700 * 17 15 13 21 21 H 1.08996 * 109.47517 * 300.00443 * 1 2 3 22 22 H 1.09004 * 109.47099 * 60.00270 * 1 2 3 23 23 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47212 * 65.00467 * 5 2 1 25 25 H 1.09003 * 109.47571 * 304.99999 * 5 2 1 26 26 H 1.09001 * 109.46727 * 60.00178 * 6 5 2 27 27 H 1.08991 * 109.47343 * 300.00259 * 6 5 2 28 28 H 1.07998 * 119.87840 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.74749 * 179.68975 * 9 8 7 30 30 H 1.08000 * 119.87393 * 180.02562 * 10 9 8 31 31 H 1.07996 * 120.12941 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99090 * 354.17960 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7212 1.2493 6 6 3.5647 -0.6133 1.3138 7 6 4.0670 -1.3231 2.5447 8 6 4.2912 -0.6183 3.7055 9 6 4.7594 -1.2676 4.8371 10 6 5.0007 -2.6329 4.8160 11 6 4.7777 -3.3585 3.6684 12 6 4.3023 -2.7098 2.5135 13 6 4.0688 -3.4455 1.3287 14 1 3.3529 -3.0878 0.6034 15 6 4.7651 -4.6368 1.0960 16 7 5.9316 -4.8326 1.6550 17 14 4.0292 -5.9475 -0.0130 18 1 4.9568 -7.1042 -0.0953 19 1 2.7285 -6.3956 0.5461 20 1 3.8168 -5.3850 -1.3708 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.7516 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1370 26 1 3.8530 0.4370 1.3574 27 1 3.9994 -1.0727 0.4262 28 1 4.1060 0.4453 3.7334 29 1 4.9373 -0.7059 5.7422 30 1 5.3651 -3.1285 5.7036 31 1 4.9660 -4.4219 3.6543 32 1 6.3522 -4.1203 2.1616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213547097.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:32 Heat of formation + Delta-G solvation = -80.679187 kcal Electronic energy + Delta-G solvation = -14961.399816 eV Core-core repulsion = 12412.920660 eV Total energy + Delta-G solvation = -2548.479156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.52451 -39.84389 -35.93072 -35.66753 -32.75080 -31.10497 -29.40350 -27.02017 -24.87334 -22.81587 -22.18304 -21.42433 -19.59022 -17.55721 -16.88261 -16.34039 -16.27351 -15.92495 -15.69791 -15.42599 -14.22867 -14.01028 -13.89002 -13.84475 -13.59004 -13.22824 -13.05771 -12.81942 -12.51499 -12.30713 -12.01113 -11.90704 -11.75186 -11.58219 -11.27647 -11.05118 -10.81015 -9.45909 -9.41177 -9.04693 -6.38973 0.93482 0.96876 1.48061 1.62823 1.76108 2.32434 2.70023 3.51749 3.74617 3.86674 3.95420 4.05829 4.31412 4.39858 4.48699 4.60503 4.73360 4.74988 4.81801 4.92897 5.07190 5.11613 5.21149 5.31077 5.35813 5.40820 5.53644 5.81948 5.88257 6.03193 6.06842 6.32119 6.46655 6.87551 7.01921 8.07925 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.012343 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.984358 B = 2267.945579 C = 3575.996896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.082 3.918 3 H 0.101 0.899 4 F -0.236 7.236 5 C -0.131 4.131 6 C -0.049 4.049 7 C -0.204 4.204 8 C -0.086 4.086 9 C -0.248 4.248 10 C -0.099 4.099 11 C -0.245 4.245 12 C 0.073 3.927 13 C -0.545 4.545 14 H 0.074 0.926 15 C 0.002 3.998 16 N -0.823 5.823 17 Si 1.108 2.892 18 H -0.271 1.271 19 H -0.264 1.264 20 H -0.261 1.261 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 7.407 -1.701 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.046 3.954 3 H 0.119 0.881 4 F -0.217 7.217 5 C -0.168 4.168 6 C -0.086 4.086 7 C -0.205 4.205 8 C -0.104 4.104 9 C -0.267 4.267 10 C -0.117 4.117 11 C -0.265 4.265 12 C 0.071 3.929 13 C -0.573 4.573 14 H 0.092 0.908 15 C -0.214 4.214 16 N -0.447 5.447 17 Si 0.926 3.074 18 H -0.196 1.196 19 H -0.189 1.189 20 H -0.186 1.186 21 H 0.112 0.888 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.706 5.864 -2.296 9.952 hybrid contribution 0.238 1.157 0.797 1.425 sum -7.468 7.021 -1.499 10.359 Atomic orbital electron populations 1.22349 0.92625 1.03445 1.04612 1.21868 0.96057 0.96455 0.80993 0.88087 1.92770 1.90770 1.84070 1.54115 1.22112 0.95861 1.00877 0.97984 1.20118 0.94935 0.98493 0.95091 1.20020 1.11065 0.92976 0.96422 1.20858 0.98147 0.98893 0.92491 1.20762 1.12215 0.94407 0.99273 1.20902 0.99086 0.95071 0.96660 1.21164 1.12578 0.98151 0.94557 1.17863 0.90190 0.92097 0.92780 1.20688 1.23471 1.08053 1.05093 0.90782 1.28274 0.93522 1.01361 0.98207 1.70568 1.12979 1.36739 1.24397 0.83125 0.76174 0.73239 0.74910 1.19608 1.18850 1.18555 0.88812 0.90357 0.92435 0.93246 0.89264 0.91123 0.93976 0.85811 0.86193 0.87327 0.89937 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 9.65 71.98 0.69 -2.99 16 2 C 0.08 2.28 3.96 30.59 0.12 2.40 16 3 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 4 F -0.24 -8.36 16.76 44.97 0.75 -7.60 16 5 C -0.13 -4.43 4.86 30.59 0.15 -4.28 16 6 C -0.05 -1.96 4.60 29.85 0.14 -1.82 16 7 C -0.20 -9.52 5.19 -19.40 -0.10 -9.63 16 8 C -0.09 -3.61 9.66 22.22 0.21 -3.40 16 9 C -0.25 -10.48 10.05 22.46 0.23 -10.26 16 10 C -0.10 -4.60 10.02 22.22 0.22 -4.38 16 11 C -0.24 -13.05 7.95 22.73 0.18 -12.87 16 12 C 0.07 3.93 5.30 -21.29 -0.11 3.82 16 13 C -0.54 -29.77 8.05 23.46 0.19 -29.58 16 14 H 0.07 4.01 6.15 -2.91 -0.02 3.99 16 15 C 0.00 0.10 4.94 85.25 0.42 0.52 16 16 N -0.82 -46.21 12.31 21.82 0.27 -45.94 16 17 Si 1.11 45.52 30.00 68.60 2.06 47.57 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.96 7.30 -2.39 -0.02 1.94 16 25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 27 H 0.04 1.91 6.85 -2.39 -0.02 1.90 16 28 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.08 4.65 6.49 -2.91 -0.02 4.63 16 32 H 0.28 16.48 6.68 -92.71 -0.62 15.86 16 Total: -1.00 -61.34 271.03 6.67 -54.67 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.24 Total: 23.76 kcal Atomic # 6 Polarization: -74.81 SS G_CDS: 2.34 Total: -72.46 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.27 Total: -45.94 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 0.75 Total: -7.60 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.06 Total: 47.57 kcal Total: -61.34 6.67 -54.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213547097.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.007 kcal (2) G-P(sol) polarization free energy of solvation -61.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds