Wall clock time and date at job start Mon Mar 30 2020 02:56:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.46719 * 2 1
4 4 F 1.39901 * 109.47337 * 239.99753 * 2 1 3
5 5 C 1.52996 * 109.46754 * 119.99759 * 2 1 3
6 6 C 1.53000 * 109.47045 * 184.99992 * 5 2 1
7 7 C 1.50707 * 109.47378 * 179.97438 * 6 5 2
8 8 C 1.37643 * 120.12639 * 265.31121 * 7 6 5
9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6
10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7
11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8
12 12 C 1.40688 * 120.12508 * 84.99880 * 7 6 5
13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6
14 14 H 1.08005 * 119.99206 * 334.30257 * 13 12 7
15 15 C 1.39936 * 120.00319 * 154.30692 * 13 12 7
16 16 N 1.30829 * 120.00392 * 334.60349 * 15 13 12
17 17 Si 1.86800 * 119.99991 * 154.60526 * 15 13 12
18 18 H 1.48500 * 109.47053 * 180.02562 * 17 15 13
19 19 H 1.48502 * 109.46913 * 299.99667 * 17 15 13
20 20 H 1.48493 * 109.47308 * 59.99700 * 17 15 13
21 21 H 1.08996 * 109.47517 * 300.00443 * 1 2 3
22 22 H 1.09004 * 109.47099 * 60.00270 * 1 2 3
23 23 H 1.08997 * 109.47370 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47212 * 65.00467 * 5 2 1
25 25 H 1.09003 * 109.47571 * 304.99999 * 5 2 1
26 26 H 1.09001 * 109.46727 * 60.00178 * 6 5 2
27 27 H 1.08991 * 109.47343 * 300.00259 * 6 5 2
28 28 H 1.07998 * 119.87840 * 0.02562 * 8 7 6
29 29 H 1.07996 * 119.74749 * 179.68975 * 9 8 7
30 30 H 1.08000 * 119.87393 * 180.02562 * 10 9 8
31 31 H 1.07996 * 120.12941 * 180.02562 * 11 10 9
32 32 H 0.97000 * 119.99090 * 354.17960 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 9 1.9964 -0.6595 -1.1422
5 6 2.0399 -0.7212 1.2493
6 6 3.5647 -0.6133 1.3138
7 6 4.0670 -1.3231 2.5447
8 6 4.2912 -0.6183 3.7055
9 6 4.7594 -1.2676 4.8371
10 6 5.0007 -2.6329 4.8160
11 6 4.7777 -3.3585 3.6684
12 6 4.3023 -2.7098 2.5135
13 6 4.0688 -3.4455 1.3287
14 1 3.3529 -3.0878 0.6034
15 6 4.7651 -4.6368 1.0960
16 7 5.9316 -4.8326 1.6550
17 14 4.0292 -5.9475 -0.0130
18 1 4.9568 -7.1042 -0.0953
19 1 2.7285 -6.3956 0.5461
20 1 3.8168 -5.3850 -1.3708
21 1 -0.3634 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 1.7516 -1.7715 1.2056
25 1 1.6053 -0.2617 2.1370
26 1 3.8530 0.4370 1.3574
27 1 3.9994 -1.0727 0.4262
28 1 4.1060 0.4453 3.7334
29 1 4.9373 -0.7059 5.7422
30 1 5.3651 -3.1285 5.7036
31 1 4.9660 -4.4219 3.6543
32 1 6.3522 -4.1203 2.1616
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000213547097.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:32
Heat of formation + Delta-G solvation = -80.679187 kcal
Electronic energy + Delta-G solvation = -14961.399816 eV
Core-core repulsion = 12412.920660 eV
Total energy + Delta-G solvation = -2548.479156 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.112 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-48.52451 -39.84389 -35.93072 -35.66753 -32.75080 -31.10497 -29.40350 -27.02017
-24.87334 -22.81587 -22.18304 -21.42433 -19.59022 -17.55721 -16.88261 -16.34039
-16.27351 -15.92495 -15.69791 -15.42599 -14.22867 -14.01028 -13.89002 -13.84475
-13.59004 -13.22824 -13.05771 -12.81942 -12.51499 -12.30713 -12.01113 -11.90704
-11.75186 -11.58219 -11.27647 -11.05118 -10.81015 -9.45909 -9.41177 -9.04693
-6.38973 0.93482 0.96876 1.48061 1.62823 1.76108 2.32434 2.70023
3.51749 3.74617 3.86674 3.95420 4.05829 4.31412 4.39858 4.48699
4.60503 4.73360 4.74988 4.81801 4.92897 5.07190 5.11613 5.21149
5.31077 5.35813 5.40820 5.53644 5.81948 5.88257 6.03193 6.06842
6.32119 6.46655 6.87551 7.01921 8.07925
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.017945 B = 0.012343 C = 0.007828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1559.984358 B = 2267.945579 C = 3575.996896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.082 3.918
3 H 0.101 0.899
4 F -0.236 7.236
5 C -0.131 4.131
6 C -0.049 4.049
7 C -0.204 4.204
8 C -0.086 4.086
9 C -0.248 4.248
10 C -0.099 4.099
11 C -0.245 4.245
12 C 0.073 3.927
13 C -0.545 4.545
14 H 0.074 0.926
15 C 0.002 3.998
16 N -0.823 5.823
17 Si 1.108 2.892
18 H -0.271 1.271
19 H -0.264 1.264
20 H -0.261 1.261
21 H 0.093 0.907
22 H 0.077 0.923
23 H 0.056 0.944
24 H 0.049 0.951
25 H 0.089 0.911
26 H 0.070 0.930
27 H 0.042 0.958
28 H 0.124 0.876
29 H 0.120 0.880
30 H 0.109 0.891
31 H 0.082 0.918
32 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.020 7.407 -1.701 11.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.046 3.954
3 H 0.119 0.881
4 F -0.217 7.217
5 C -0.168 4.168
6 C -0.086 4.086
7 C -0.205 4.205
8 C -0.104 4.104
9 C -0.267 4.267
10 C -0.117 4.117
11 C -0.265 4.265
12 C 0.071 3.929
13 C -0.573 4.573
14 H 0.092 0.908
15 C -0.214 4.214
16 N -0.447 5.447
17 Si 0.926 3.074
18 H -0.196 1.196
19 H -0.189 1.189
20 H -0.186 1.186
21 H 0.112 0.888
22 H 0.096 0.904
23 H 0.076 0.924
24 H 0.068 0.932
25 H 0.107 0.893
26 H 0.089 0.911
27 H 0.060 0.940
28 H 0.142 0.858
29 H 0.138 0.862
30 H 0.127 0.873
31 H 0.101 0.899
32 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -7.706 5.864 -2.296 9.952
hybrid contribution 0.238 1.157 0.797 1.425
sum -7.468 7.021 -1.499 10.359
Atomic orbital electron populations
1.22349 0.92625 1.03445 1.04612 1.21868 0.96057 0.96455 0.80993
0.88087 1.92770 1.90770 1.84070 1.54115 1.22112 0.95861 1.00877
0.97984 1.20118 0.94935 0.98493 0.95091 1.20020 1.11065 0.92976
0.96422 1.20858 0.98147 0.98893 0.92491 1.20762 1.12215 0.94407
0.99273 1.20902 0.99086 0.95071 0.96660 1.21164 1.12578 0.98151
0.94557 1.17863 0.90190 0.92097 0.92780 1.20688 1.23471 1.08053
1.05093 0.90782 1.28274 0.93522 1.01361 0.98207 1.70568 1.12979
1.36739 1.24397 0.83125 0.76174 0.73239 0.74910 1.19608 1.18850
1.18555 0.88812 0.90357 0.92435 0.93246 0.89264 0.91123 0.93976
0.85811 0.86193 0.87327 0.89937 0.90610
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.68 9.65 71.98 0.69 -2.99 16
2 C 0.08 2.28 3.96 30.59 0.12 2.40 16
3 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16
4 F -0.24 -8.36 16.76 44.97 0.75 -7.60 16
5 C -0.13 -4.43 4.86 30.59 0.15 -4.28 16
6 C -0.05 -1.96 4.60 29.85 0.14 -1.82 16
7 C -0.20 -9.52 5.19 -19.40 -0.10 -9.63 16
8 C -0.09 -3.61 9.66 22.22 0.21 -3.40 16
9 C -0.25 -10.48 10.05 22.46 0.23 -10.26 16
10 C -0.10 -4.60 10.02 22.22 0.22 -4.38 16
11 C -0.24 -13.05 7.95 22.73 0.18 -12.87 16
12 C 0.07 3.93 5.30 -21.29 -0.11 3.82 16
13 C -0.54 -29.77 8.05 23.46 0.19 -29.58 16
14 H 0.07 4.01 6.15 -2.91 -0.02 3.99 16
15 C 0.00 0.10 4.94 85.25 0.42 0.52 16
16 N -0.82 -46.21 12.31 21.82 0.27 -45.94 16
17 Si 1.11 45.52 30.00 68.60 2.06 47.57 16
18 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16
19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16
20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16
21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
22 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16
23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
24 H 0.05 1.96 7.30 -2.39 -0.02 1.94 16
25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16
26 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16
27 H 0.04 1.91 6.85 -2.39 -0.02 1.90 16
28 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16
29 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16
30 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16
31 H 0.08 4.65 6.49 -2.91 -0.02 4.63 16
32 H 0.28 16.48 6.68 -92.71 -0.62 15.86 16
Total: -1.00 -61.34 271.03 6.67 -54.67
By element:
Atomic # 1 Polarization: 22.52 SS G_CDS: 1.24 Total: 23.76 kcal
Atomic # 6 Polarization: -74.81 SS G_CDS: 2.34 Total: -72.46 kcal
Atomic # 7 Polarization: -46.21 SS G_CDS: 0.27 Total: -45.94 kcal
Atomic # 9 Polarization: -8.36 SS G_CDS: 0.75 Total: -7.60 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.06 Total: 47.57 kcal
Total: -61.34 6.67 -54.67 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000213547097.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.007 kcal
(2) G-P(sol) polarization free energy of solvation -61.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.679 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds