Wall clock time and date at job start Mon Mar 30 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 F 1.39897 * 109.46698 * 119.99850 * 2 1 3 5 5 C 1.52996 * 109.46824 * 239.99656 * 2 1 3 6 6 C 1.53000 * 109.47045 * 175.00135 * 5 2 1 7 7 C 1.50707 * 109.47378 * 179.97438 * 6 5 2 8 8 C 1.37643 * 120.12639 * 265.31121 * 7 6 5 9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6 10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7 11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8 12 12 C 1.40688 * 120.12508 * 84.99880 * 7 6 5 13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6 14 14 H 1.08000 * 119.99352 * 334.30755 * 13 12 7 15 15 C 1.39936 * 120.00319 * 154.30692 * 13 12 7 16 16 N 1.30821 * 120.00341 * 334.60655 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 154.60526 * 15 13 12 18 18 H 1.48507 * 109.47334 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47070 * 300.00020 * 17 15 13 20 20 H 1.48493 * 109.47308 * 59.99700 * 17 15 13 21 21 H 1.08991 * 109.47247 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46665 * 300.00443 * 1 2 3 23 23 H 1.09005 * 109.46670 * 60.00053 * 1 2 3 24 24 H 1.09001 * 109.47212 * 55.00610 * 5 2 1 25 25 H 1.09003 * 109.47571 * 295.00142 * 5 2 1 26 26 H 1.09001 * 109.46727 * 60.00178 * 6 5 2 27 27 H 1.08991 * 109.47343 * 300.00259 * 6 5 2 28 28 H 1.07998 * 119.87840 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.74749 * 179.68975 * 9 8 7 30 30 H 1.08000 * 119.87393 * 180.02562 * 10 9 8 31 31 H 1.07996 * 120.12941 * 180.02562 * 11 10 9 32 32 H 0.97004 * 119.99533 * 354.17235 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 3.5648 -0.6134 -1.3137 7 6 4.0672 -1.3245 -2.5438 8 6 4.4864 -2.6330 -2.4626 9 6 4.9551 -3.2872 -3.5912 10 6 5.0011 -2.6356 -4.8142 11 6 4.5813 -1.3296 -4.9201 12 6 4.1034 -0.6553 -3.7809 13 6 3.6686 0.6867 -3.8778 14 1 2.9500 1.0738 -3.1706 15 6 4.1695 1.5132 -4.8898 16 7 5.3409 1.2654 -5.4169 17 14 3.1654 2.9702 -5.4883 18 1 3.9122 3.6803 -6.5576 19 1 1.8679 2.4893 -6.0271 20 1 2.9176 3.8990 -4.3565 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 1.6054 -0.2618 -2.1369 25 1 1.7516 -1.7716 -1.2055 26 1 3.9994 -1.0729 -0.4259 27 1 3.8532 0.4367 -1.3573 28 1 4.4544 -3.1504 -1.5152 29 1 5.2867 -4.3124 -3.5173 30 1 5.3678 -3.1552 -5.6871 31 1 4.6176 -0.8241 -5.8737 32 1 5.8988 0.5618 -5.0500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213547156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:34 Heat of formation + Delta-G solvation = -80.569181 kcal Electronic energy + Delta-G solvation = -14894.810217 eV Core-core repulsion = 12346.335831 eV Total energy + Delta-G solvation = -2548.474386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.55938 -39.85230 -35.92036 -35.67999 -32.75085 -31.10859 -29.41656 -27.01511 -24.88339 -22.81858 -22.21296 -21.42733 -19.57450 -17.60864 -16.84662 -16.40824 -16.20176 -15.98709 -15.73456 -15.34113 -14.24995 -14.05753 -13.90439 -13.82402 -13.57194 -13.24892 -13.06630 -12.82314 -12.50859 -12.28097 -11.98985 -11.93766 -11.75391 -11.58531 -11.29698 -11.04713 -10.79990 -9.46792 -9.41021 -9.03738 -6.38055 0.93122 0.96463 1.52405 1.66407 1.79753 2.35997 2.71894 3.51447 3.71897 3.84302 3.93604 4.04884 4.30541 4.39307 4.45877 4.59671 4.71920 4.74413 4.80354 4.92289 5.08579 5.10259 5.20129 5.29597 5.32856 5.38974 5.53562 5.81686 5.87862 6.01846 6.06659 6.31240 6.45730 6.87089 7.03342 8.09755 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.010977 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.531237 B = 2550.186063 C = 3747.043446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 H 0.089 0.911 4 F -0.230 7.230 5 C -0.129 4.129 6 C -0.048 4.048 7 C -0.204 4.204 8 C -0.090 4.090 9 C -0.250 4.250 10 C -0.098 4.098 11 C -0.245 4.245 12 C 0.076 3.924 13 C -0.543 4.543 14 H 0.084 0.916 15 C 0.001 3.999 16 N -0.824 5.824 17 Si 1.111 2.889 18 H -0.278 1.278 19 H -0.263 1.263 20 H -0.254 1.254 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 0.315 6.177 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.049 3.951 3 H 0.107 0.893 4 F -0.211 7.211 5 C -0.167 4.167 6 C -0.085 4.085 7 C -0.205 4.205 8 C -0.108 4.108 9 C -0.269 4.269 10 C -0.116 4.116 11 C -0.264 4.264 12 C 0.073 3.927 13 C -0.571 4.571 14 H 0.102 0.898 15 C -0.214 4.214 16 N -0.448 5.448 17 Si 0.928 3.072 18 H -0.203 1.203 19 H -0.188 1.188 20 H -0.178 1.178 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.446 1.512 5.087 9.144 hybrid contribution 0.576 -1.593 0.840 1.891 sum -6.871 -0.082 5.927 9.074 Atomic orbital electron populations 1.22340 0.92500 1.03805 1.04369 1.21759 0.96113 0.96236 0.81014 0.89296 1.92751 1.90737 1.83842 1.53811 1.22082 0.95901 1.01072 0.97600 1.20100 0.94952 0.99337 0.94111 1.19998 1.10191 0.95789 0.94503 1.20838 0.98110 0.94137 0.97734 1.20721 1.12413 1.00361 0.93413 1.20894 0.98881 0.94413 0.97454 1.21181 1.11762 0.95843 0.97623 1.17849 0.90064 0.93884 0.90879 1.20726 1.25066 0.96213 1.15135 0.89789 1.28360 0.96071 1.04377 0.92618 1.70565 1.08118 1.28101 1.37985 0.83090 0.74730 0.71891 0.77464 1.20279 1.18811 1.17776 0.91535 0.90281 0.89643 0.90610 0.91826 0.92558 0.92751 0.86820 0.86524 0.87311 0.89685 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.65 71.98 0.69 -3.03 16 2 C 0.08 2.37 3.96 30.60 0.12 2.49 16 3 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 4 F -0.23 -7.27 16.76 44.97 0.75 -6.52 16 5 C -0.13 -4.38 4.86 30.59 0.15 -4.23 16 6 C -0.05 -1.91 4.60 29.85 0.14 -1.78 16 7 C -0.20 -9.58 5.19 -19.40 -0.10 -9.68 16 8 C -0.09 -3.96 9.66 22.22 0.21 -3.75 16 9 C -0.25 -10.92 10.05 22.46 0.23 -10.69 16 10 C -0.10 -4.59 10.02 22.22 0.22 -4.37 16 11 C -0.24 -12.85 7.95 22.73 0.18 -12.67 16 12 C 0.08 3.97 5.30 -21.29 -0.11 3.86 16 13 C -0.54 -27.96 8.05 23.46 0.19 -27.77 16 14 H 0.08 4.07 6.15 -2.91 -0.02 4.05 16 15 C 0.00 0.07 4.94 85.25 0.42 0.49 16 16 N -0.82 -44.78 12.31 21.82 0.27 -44.51 16 17 Si 1.11 42.25 30.00 68.60 2.06 44.30 16 18 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 20 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.08 2.71 7.30 -2.39 -0.02 2.69 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.14 7.85 -2.39 -0.02 2.13 16 27 H 0.05 2.29 7.06 -2.39 -0.02 2.28 16 28 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.08 4.70 6.49 -2.91 -0.02 4.68 16 32 H 0.28 16.06 6.68 -92.71 -0.62 15.44 16 Total: -1.00 -57.82 271.03 6.67 -51.15 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 1.24 Total: 26.70 kcal Atomic # 6 Polarization: -73.47 SS G_CDS: 2.34 Total: -71.13 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.27 Total: -44.51 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.75 Total: -6.52 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.06 Total: 44.30 kcal Total: -57.82 6.67 -51.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213547156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.418 kcal (2) G-P(sol) polarization free energy of solvation -57.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds