Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47097 * 2 1 4 4 C 1.52997 * 109.47171 * 239.99907 * 2 1 3 5 5 C 1.50703 * 109.47234 * 119.99646 * 2 1 3 6 6 N 1.30792 * 118.52661 * 0.02562 * 5 2 1 7 7 C 1.32695 * 122.45124 * 179.97438 * 6 5 2 8 8 C 1.40526 * 119.28598 * 0.02562 * 7 6 5 9 9 C 1.40586 * 121.28570 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99670 * 156.00925 * 9 8 7 11 11 C 1.40059 * 119.99935 * 335.73739 * 9 8 7 12 12 N 1.30835 * 120.00281 * 343.33726 * 11 9 8 13 13 Si 1.86803 * 119.99899 * 163.34117 * 11 9 8 14 14 H 1.48501 * 109.47082 * 59.99726 * 13 11 9 15 15 H 1.48498 * 109.47415 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47324 * 299.99749 * 13 11 9 17 17 C 1.47632 * 117.42574 * 0.27027 * 8 7 6 18 18 O 1.21739 * 121.15264 * 179.72792 * 17 8 7 19 19 N 1.34657 * 118.53116 * 180.02562 * 5 2 1 20 20 H 0.96996 * 119.90103 * 0.02562 * 19 5 2 21 21 H 1.09000 * 109.47356 * 299.99926 * 1 2 3 22 22 H 1.09003 * 109.47208 * 60.00167 * 1 2 3 23 23 H 1.09002 * 109.47410 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46934 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47281 * 300.00033 * 3 2 1 26 26 H 1.09007 * 109.47251 * 60.00070 * 3 2 1 27 27 H 1.08998 * 109.47136 * 299.99435 * 4 2 1 28 28 H 1.08991 * 109.47296 * 60.00528 * 4 2 1 29 29 H 1.09004 * 109.46589 * 180.02562 * 4 2 1 30 30 H 1.07999 * 120.36146 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99935 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 1.1571 -1.1967 2.0720 7 6 1.5128 -1.8363 3.1789 8 6 2.8779 -2.0027 3.4682 9 6 3.3017 -2.6729 4.6291 10 1 4.2794 -3.1304 4.6619 11 6 2.4583 -2.7421 5.7451 12 7 1.4362 -1.9314 5.8441 13 14 2.7927 -3.9921 7.0924 14 1 4.1370 -3.7460 7.6734 15 1 1.7635 -3.8621 8.1549 16 1 2.7439 -5.3616 6.5204 17 6 3.8496 -1.4407 2.5093 18 8 5.0484 -1.5415 2.6956 19 7 3.3621 -0.8159 1.4144 20 1 3.9720 -0.4382 0.7616 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2074 -2.1391 29 1 3.1300 -0.7216 -1.2489 30 1 0.7614 -2.2248 3.8503 31 1 0.8523 -1.9791 6.6172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214639094.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = -29.366668 kcal Electronic energy + Delta-G solvation = -15273.445237 eV Core-core repulsion = 12747.111121 eV Total energy + Delta-G solvation = -2526.334116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92936 -37.00910 -35.21372 -34.09432 -32.27904 -29.53021 -26.99285 -26.77667 -25.65529 -22.91605 -21.93607 -19.08056 -18.24956 -16.61223 -16.21063 -15.17731 -15.05712 -14.46034 -13.78185 -13.53885 -13.53629 -13.18109 -12.24869 -12.14869 -11.75978 -11.57862 -11.38332 -11.36201 -11.19433 -10.98378 -10.77954 -10.57100 -10.44780 -10.41928 -9.60678 -9.06132 -8.79199 -8.30818 -7.23101 -6.98215 -4.30900 2.25256 2.98777 3.01465 3.05171 3.43062 3.77924 4.15402 4.42435 5.03497 5.21327 5.26214 5.57715 5.67499 5.83964 5.94470 6.01939 6.13574 6.18330 6.29140 6.30789 6.41807 6.53820 6.67434 6.88173 6.94268 7.33514 7.52187 7.77541 8.12258 8.25072 8.48513 8.57165 9.30087 9.74910 9.93229 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.044115 B = 0.008282 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.557214 B = 3379.844225 C = 3766.749739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.004 3.996 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.185 3.815 6 N -0.460 5.460 7 C -0.062 4.062 8 C -0.021 4.021 9 C -0.385 4.385 10 H 0.089 0.911 11 C 0.063 3.937 12 N -0.767 5.767 13 Si 0.923 3.077 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.260 1.260 17 C 0.498 3.502 18 O -0.577 6.577 19 N -0.620 5.620 20 H 0.388 0.612 21 H 0.061 0.939 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.154 0.846 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 2.371 -6.966 7.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.002 3.998 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.072 4.072 6 N -0.176 5.176 7 C -0.207 4.207 8 C -0.029 4.029 9 C -0.414 4.414 10 H 0.107 0.893 11 C -0.158 4.158 12 N -0.390 5.390 13 Si 0.746 3.254 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.184 1.184 17 C 0.295 3.705 18 O -0.460 6.460 19 N -0.261 5.261 20 H 0.224 0.776 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.171 0.829 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.169 2.310 -6.548 7.633 hybrid contribution 1.234 -0.310 0.656 1.431 sum -1.935 2.001 -5.892 6.517 Atomic orbital electron populations 1.21518 0.92713 1.02421 1.00509 1.19159 0.96869 0.93432 0.90366 1.21905 1.00504 0.95605 1.01802 1.21901 1.00494 1.00776 0.96521 1.21105 0.79279 1.07998 0.98830 1.66987 1.35104 1.11105 1.04436 1.22371 0.94118 1.08498 0.95703 1.20464 0.92076 0.96648 0.93761 1.19396 1.01816 1.24880 0.95324 0.89308 1.26087 0.94224 0.95702 0.99766 1.69784 1.11817 1.28773 1.28659 0.86099 0.79393 0.80963 0.78908 1.18638 1.19942 1.18416 1.19570 0.89337 0.79885 0.81748 1.90698 1.16215 1.62525 1.76517 1.43792 1.08270 1.51465 1.22580 0.77616 0.92022 0.93905 0.92052 0.93231 0.92427 0.92304 0.92308 0.92451 0.93217 0.82939 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 7.65 37.15 0.28 -1.45 16 2 C 0.00 0.06 0.84 -155.66 -0.13 -0.07 16 3 C -0.14 -1.95 8.35 37.16 0.31 -1.64 16 4 C -0.14 -1.88 8.35 37.16 0.31 -1.57 16 5 C 0.18 3.89 6.31 -155.52 -0.98 2.91 16 6 N -0.46 -10.99 8.80 -9.74 -0.09 -11.07 16 7 C -0.06 -1.65 9.99 -16.32 -0.16 -1.81 16 8 C -0.02 -0.58 5.76 -104.32 -0.60 -1.18 16 9 C -0.38 -10.45 8.86 -38.01 -0.34 -10.79 16 10 H 0.09 2.42 7.83 -52.49 -0.41 2.00 16 11 C 0.06 1.55 5.20 -17.29 -0.09 1.46 16 12 N -0.77 -19.26 10.94 55.56 0.61 -18.65 16 13 Si 0.92 18.35 29.59 -169.99 -5.03 13.32 16 14 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 17 C 0.50 13.15 7.99 -12.25 -0.10 13.06 16 18 O -0.58 -16.41 17.56 5.15 0.09 -16.32 16 19 N -0.62 -13.52 4.97 -10.39 -0.05 -13.57 16 20 H 0.39 7.27 7.34 -40.82 -0.30 6.97 16 21 H 0.06 1.02 8.03 -51.93 -0.42 0.60 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.99 8.03 -51.93 -0.42 0.57 16 24 H 0.05 0.66 7.43 -51.93 -0.39 0.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 30 H 0.15 4.14 6.21 -52.49 -0.33 3.82 16 31 H 0.29 6.49 8.30 -40.82 -0.34 6.16 16 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -29.77 263.79 -5.88 -35.65 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.89 Total: 7.76 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.49 Total: -1.08 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.47 Total: -43.30 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.77 -5.88 -35.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214639094.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.279 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds