Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46742 * 2 1 4 4 N 1.46498 * 109.47350 * 120.00123 * 2 1 3 5 5 C 1.34134 * 125.70425 * 275.00310 * 4 2 1 6 6 C 1.38451 * 107.37033 * 179.73567 * 5 4 2 7 7 C 1.46668 * 126.47603 * 179.97438 * 6 5 4 8 8 O 1.21307 * 120.00015 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99877 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47250 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99704 * 359.97438 * 10 9 7 12 12 C 1.37872 * 120.00493 * 180.02562 * 10 9 7 13 13 N 1.31517 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00213 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47156 * 89.99914 * 14 12 10 16 16 H 1.48506 * 109.46929 * 209.99978 * 14 12 10 17 17 H 1.48495 * 109.47242 * 329.99563 * 14 12 10 18 18 C 1.41557 * 107.04953 * 0.02562 * 6 5 4 19 19 N 1.30376 * 107.97950 * 359.97438 * 18 6 5 20 20 H 1.09002 * 109.47054 * 299.99743 * 1 2 3 21 21 H 1.08994 * 109.47405 * 59.99974 * 1 2 3 22 22 H 1.09008 * 109.46767 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47054 * 240.00257 * 2 1 3 24 24 H 1.08994 * 109.47192 * 300.00156 * 3 2 1 25 25 H 1.09002 * 109.47136 * 60.00307 * 3 2 1 26 26 H 1.09006 * 109.46889 * 179.97438 * 3 2 1 27 27 H 1.08006 * 126.31335 * 359.71047 * 5 4 2 28 28 H 1.09004 * 109.47044 * 300.00026 * 9 7 6 29 29 H 1.08999 * 109.47017 * 60.00135 * 9 7 6 30 30 H 0.97001 * 120.00440 * 180.02562 * 13 12 10 31 31 H 1.07997 * 126.01160 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1898 -0.1358 2.4052 6 6 2.6580 -1.1262 3.2519 7 6 2.9865 -0.9747 4.6732 8 8 2.8541 0.1026 5.2149 9 6 3.4886 -2.1575 5.4607 10 6 3.7495 -1.7387 6.8846 11 1 3.5702 -0.7180 7.1888 12 6 4.2182 -2.6582 7.7988 13 7 4.4371 -3.9010 7.4283 14 14 4.5423 -2.1389 9.5637 15 1 3.3115 -2.3345 10.3712 16 1 5.6411 -2.9631 10.1283 17 1 4.9322 -0.7064 9.5945 18 6 2.7609 -2.3123 2.4862 19 7 2.3786 -2.0405 1.2697 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.9983 0.8938 2.6695 28 1 2.7385 -2.9482 5.4466 29 1 4.4126 -2.5251 5.0146 30 1 4.7665 -4.5481 8.0715 31 1 3.0962 -3.2736 2.8464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232797576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = 24.902154 kcal Electronic energy + Delta-G solvation = -14520.614417 eV Core-core repulsion = 11996.633573 eV Total energy + Delta-G solvation = -2523.980844 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06193 -37.78124 -35.77118 -32.85566 -30.38049 -30.10339 -28.54085 -27.61437 -24.48222 -22.57371 -21.61469 -19.73721 -18.81517 -16.72218 -16.13541 -15.39613 -14.86037 -14.64178 -14.36398 -14.01000 -13.58382 -13.41353 -12.91900 -12.67219 -12.49905 -12.23152 -11.96204 -11.66007 -11.43219 -11.08862 -10.75577 -10.57993 -10.53272 -9.92269 -9.31627 -9.18496 -8.37494 -8.36795 -8.25650 -5.98237 -3.97847 1.84105 2.48866 2.54472 3.38753 3.44002 3.50886 4.02397 4.26597 4.51721 4.58890 4.76099 4.89244 5.02254 5.15807 5.30651 5.36540 5.39718 5.47113 5.65151 5.69539 5.83394 5.89999 5.93763 6.76481 6.97032 7.08317 7.36646 7.48174 7.86557 8.01695 8.33940 8.88208 9.11733 9.66500 11.14014 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.061817 B = 0.005596 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.843950 B = 5001.935282 C = 5289.298424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 C -0.167 4.167 4 N -0.364 5.364 5 C 0.106 3.894 6 C -0.305 4.305 7 C 0.424 3.576 8 O -0.483 6.483 9 C -0.018 4.018 10 C -0.513 4.513 11 H 0.072 0.928 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.897 3.103 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.096 3.904 19 N -0.313 5.313 20 H 0.063 0.937 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.178 0.822 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.261 0.739 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 6.899 -15.622 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 C -0.225 4.225 4 N -0.144 5.144 5 C -0.043 4.043 6 C -0.318 4.318 7 C 0.303 3.697 8 O -0.359 6.359 9 C -0.054 4.054 10 C -0.551 4.551 11 H 0.090 0.910 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.091 4.091 19 N -0.132 5.132 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.121 0.879 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.196 0.804 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.223 6.895 -16.583 19.007 hybrid contribution 0.313 0.353 1.683 1.748 sum -5.910 7.248 -14.901 17.593 Atomic orbital electron populations 1.22251 0.93607 1.03430 1.03078 1.21283 0.94868 0.92779 0.85986 1.22230 1.02542 0.94028 1.03739 1.48665 1.49755 1.07696 1.08310 1.23092 0.96693 0.99645 0.84893 1.21640 1.17239 0.93853 0.99062 1.22426 0.71911 0.90972 0.84351 1.90354 1.43784 1.29889 1.71909 1.19475 0.98048 0.92397 0.95525 1.21215 1.43210 0.97194 0.93481 0.91002 1.24992 0.95572 0.94869 0.99064 1.69959 1.46326 1.02777 1.34938 0.86495 0.77788 0.78654 0.84532 1.20675 1.21314 1.19747 1.24286 0.95751 0.99474 0.89633 1.77055 1.22334 0.92548 1.21265 0.91748 0.90531 0.91491 0.87912 0.89968 0.91297 0.91313 0.80450 0.92971 0.92954 0.92993 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.52 37.16 0.35 -1.02 16 2 C 0.15 1.48 3.91 -67.93 -0.27 1.21 16 3 C -0.17 -1.26 8.82 37.16 0.33 -0.93 16 4 N -0.36 -5.17 3.49 -54.23 -0.19 -5.36 16 5 C 0.11 1.68 10.40 -16.47 -0.17 1.51 16 6 C -0.31 -5.80 6.11 -105.15 -0.64 -6.45 16 7 C 0.42 9.85 7.12 -30.91 -0.22 9.63 16 8 O -0.48 -12.32 16.01 5.53 0.09 -12.23 16 9 C -0.02 -0.46 4.94 -29.04 -0.14 -0.60 16 10 C -0.51 -15.01 8.92 -34.44 -0.31 -15.32 16 11 H 0.07 2.17 6.75 -52.48 -0.35 1.81 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.10 1.66 11.55 -16.91 -0.20 1.46 16 19 N -0.31 -5.15 12.49 30.91 0.39 -4.76 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.52 7.12 -51.93 -0.37 0.15 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.18 2.42 7.22 -52.48 -0.38 2.04 16 28 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.20 3.03 8.04 -52.49 -0.42 2.61 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -33.51 275.46 -5.25 -38.76 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.04 Total: -2.88 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.36 Total: -8.99 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.93 Total: -36.07 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.51 -5.25 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232797576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.666 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds