Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46506 * 109.46691 * 179.97438 * 3 2 1 5 5 C 1.34135 * 125.69937 * 125.00346 * 4 3 2 6 6 C 1.38452 * 107.36537 * 179.97438 * 5 4 3 7 7 C 1.46664 * 126.47625 * 179.97438 * 6 5 4 8 8 O 1.21323 * 119.99797 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00373 * 180.02562 * 7 6 5 10 10 C 1.50708 * 109.47333 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99955 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99889 * 180.02562 * 10 9 7 13 13 N 1.31509 * 120.00112 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99907 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47173 * 59.99761 * 14 12 10 16 16 H 1.48496 * 109.46966 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46684 * 299.99817 * 14 12 10 18 18 C 1.41552 * 107.05017 * 0.02562 * 6 5 4 19 19 N 1.30372 * 107.98236 * 359.71248 * 18 6 5 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 24 24 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 25 25 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.08000 * 126.31517 * 359.97438 * 5 4 3 28 28 H 1.08992 * 109.47611 * 300.00361 * 9 7 6 29 29 H 1.09004 * 109.46778 * 60.00718 * 9 7 6 30 30 H 0.97011 * 120.00271 * 180.02562 * 13 12 10 31 31 H 1.08005 * 126.00766 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2881 2.0673 -0.8914 6 6 5.6022 1.8180 -0.5337 7 6 6.8011 2.3025 -1.2258 8 8 6.6917 2.9951 -2.2159 9 6 8.1688 1.9400 -0.7072 10 6 9.2213 2.5590 -1.5905 11 1 8.9291 3.1556 -2.4420 12 6 10.5573 2.3637 -1.3115 13 7 10.9132 1.6377 -0.2744 14 14 11.8620 3.1316 -2.4060 15 1 11.7065 4.6083 -2.4002 16 1 13.2097 2.7733 -1.8957 17 1 11.7069 2.6229 -3.7925 18 6 5.5700 1.0062 0.6254 19 7 4.3211 0.7959 0.9349 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.9550 2.6561 -1.7333 28 1 8.2827 2.3144 0.3101 29 1 8.2830 0.8560 -0.7104 30 1 11.8533 1.5005 -0.0779 31 1 6.4290 0.6315 1.1622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233403936.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = 21.299934 kcal Electronic energy + Delta-G solvation = -14270.678969 eV Core-core repulsion = 11746.541922 eV Total energy + Delta-G solvation = -2524.137048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99020 -37.75523 -35.45348 -32.86683 -31.70588 -30.07905 -28.81754 -26.51501 -23.91645 -22.36683 -21.54789 -20.35382 -18.65527 -16.79960 -16.17410 -15.76063 -14.86832 -14.64854 -14.33032 -14.15844 -13.65109 -13.46271 -13.13717 -12.54900 -12.32802 -12.22039 -11.94034 -11.63779 -11.17245 -11.07856 -10.77936 -10.53651 -10.52158 -9.92866 -9.32895 -9.20280 -8.37924 -8.37469 -8.26463 -5.98430 -3.98185 1.82255 2.51482 2.53869 3.40937 3.43223 3.48572 4.01248 4.30551 4.51513 4.57249 4.79581 4.94255 5.00194 5.14040 5.19749 5.35155 5.39422 5.61399 5.66955 5.70384 5.84786 5.91305 5.96982 6.74939 6.95869 7.04848 7.35980 7.47662 7.83740 8.01259 8.33448 8.87246 9.11042 9.66118 11.13744 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.076268 B = 0.004985 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.038332 B = 5615.851679 C = 5875.139240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.132 3.868 4 N -0.369 5.369 5 C 0.104 3.896 6 C -0.305 4.305 7 C 0.424 3.576 8 O -0.482 6.482 9 C -0.017 4.017 10 C -0.514 4.514 11 H 0.071 0.929 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.096 3.904 19 N -0.310 5.310 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.181 0.819 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.261 0.739 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.327 -2.480 1.973 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.011 3.989 4 N -0.149 5.149 5 C -0.045 4.045 6 C -0.317 4.317 7 C 0.303 3.697 8 O -0.359 6.359 9 C -0.054 4.054 10 C -0.552 4.552 11 H 0.090 0.910 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.091 4.091 19 N -0.130 5.130 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.198 0.802 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -19.187 -2.746 2.371 19.527 hybrid contribution 1.292 0.701 -0.982 1.767 sum -17.896 -2.046 1.389 18.066 Atomic orbital electron populations 1.21713 0.94552 1.02436 1.02044 1.21804 0.96208 0.95499 1.03977 1.21817 0.74313 0.99020 1.03794 1.48507 1.06475 1.38999 1.20924 1.23219 0.90912 0.95842 0.94571 1.21643 0.94897 1.11832 1.03354 1.22432 0.90146 0.75375 0.81722 1.90360 1.89596 1.31648 1.24312 1.19471 0.88456 0.98998 0.98489 1.21178 0.90139 1.31601 1.12313 0.91048 1.24989 0.98694 0.95350 0.95433 1.69948 1.16938 1.39595 1.27511 0.86548 0.80223 0.79790 0.80826 1.20185 1.21394 1.20190 1.24299 0.94761 0.95178 0.94876 1.77025 1.02235 1.20206 1.13545 0.92462 0.91992 0.92327 0.90241 0.91325 0.88696 0.89731 0.80232 0.92951 0.92952 0.92923 0.78788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.14 -1.18 6.11 -26.73 -0.16 -1.35 16 3 C 0.13 1.22 6.48 -4.04 -0.03 1.20 16 4 N -0.37 -5.17 3.64 -60.73 -0.22 -5.39 16 5 C 0.10 1.62 11.25 -16.47 -0.19 1.43 16 6 C -0.30 -5.74 6.10 -105.15 -0.64 -6.38 16 7 C 0.42 9.80 7.12 -30.91 -0.22 9.58 16 8 O -0.48 -12.27 16.01 5.52 0.09 -12.19 16 9 C -0.02 -0.45 4.94 -29.03 -0.14 -0.59 16 10 C -0.51 -15.04 8.92 -34.44 -0.31 -15.35 16 11 H 0.07 2.15 6.75 -52.49 -0.35 1.79 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 14 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.10 1.65 11.55 -16.91 -0.20 1.45 16 19 N -0.31 -5.02 12.32 30.91 0.38 -4.64 16 20 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.20 3.01 8.04 -52.48 -0.42 2.58 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -33.43 278.33 -5.59 -39.02 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.13 Total: -3.31 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.61 Total: -9.03 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.90 Total: -35.94 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.43 -5.59 -39.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233403936.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.323 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds