Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46506 * 109.46691 * 179.97438 * 3 2 1 5 5 C 1.34135 * 125.69937 * 125.00346 * 4 3 2 6 6 C 1.38452 * 107.36537 * 179.97438 * 5 4 3 7 7 C 1.46664 * 126.47625 * 179.97438 * 6 5 4 8 8 O 1.21323 * 119.99797 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00373 * 180.02562 * 7 6 5 10 10 C 1.50708 * 109.47333 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99955 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99889 * 180.02562 * 10 9 7 13 13 N 1.31509 * 120.00112 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99907 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47173 * 59.99761 * 14 12 10 16 16 H 1.48496 * 109.46966 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46684 * 299.99817 * 14 12 10 18 18 C 1.41552 * 107.05017 * 0.02562 * 6 5 4 19 19 N 1.30372 * 107.98236 * 359.71248 * 18 6 5 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 24 24 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 25 25 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.08000 * 126.31517 * 359.97438 * 5 4 3 28 28 H 1.08992 * 109.47611 * 300.00361 * 9 7 6 29 29 H 1.09004 * 109.46778 * 60.00718 * 9 7 6 30 30 H 0.97011 * 120.00271 * 180.02562 * 13 12 10 31 31 H 1.08005 * 126.00766 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2881 2.0673 -0.8914 6 6 5.6022 1.8180 -0.5337 7 6 6.8011 2.3025 -1.2258 8 8 6.6917 2.9951 -2.2159 9 6 8.1688 1.9400 -0.7072 10 6 9.2213 2.5590 -1.5905 11 1 8.9291 3.1556 -2.4420 12 6 10.5573 2.3637 -1.3115 13 7 10.9132 1.6377 -0.2744 14 14 11.8620 3.1316 -2.4060 15 1 11.7065 4.6083 -2.4002 16 1 13.2097 2.7733 -1.8957 17 1 11.7069 2.6229 -3.7925 18 6 5.5700 1.0062 0.6254 19 7 4.3211 0.7959 0.9349 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.9550 2.6561 -1.7333 28 1 8.2827 2.3144 0.3101 29 1 8.2830 0.8560 -0.7104 30 1 11.8533 1.5005 -0.0779 31 1 6.4290 0.6315 1.1622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233403936.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = 0.124631 kcal Electronic energy + Delta-G solvation = -14271.597199 eV Core-core repulsion = 11746.541922 eV Total energy + Delta-G solvation = -2525.055278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27317 -39.56308 -36.28798 -35.05497 -32.77598 -31.63597 -30.60287 -27.58749 -25.76836 -23.40250 -22.92417 -21.49064 -20.15358 -18.51964 -17.97212 -16.72864 -16.63018 -16.07235 -15.69209 -15.44523 -15.29530 -15.10659 -14.09832 -14.05531 -13.69179 -13.23269 -13.09612 -12.91160 -12.78094 -12.51252 -12.32983 -12.09878 -11.92008 -11.60333 -11.40167 -10.58316 -10.52633 -10.22422 -9.63529 -8.20025 -6.28031 0.44441 1.09317 1.41792 1.44981 1.46013 1.53557 2.36642 2.43908 3.14672 3.31754 3.81561 3.83059 3.91589 4.11439 4.28684 4.35419 4.49587 4.56837 4.62995 4.83168 5.06163 5.12808 5.16788 5.27690 5.36675 5.37901 5.49673 5.75558 5.93176 6.19307 6.54677 6.83446 7.05741 7.40518 8.91766 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.076268 B = 0.004985 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.038332 B = 5615.851679 C = 5875.139240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.119 3.881 4 N -0.356 5.356 5 C 0.129 3.871 6 C -0.342 4.342 7 C 0.431 3.569 8 O -0.515 6.515 9 C -0.016 4.016 10 C -0.544 4.544 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.925 5.925 14 Si 0.962 3.038 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.271 1.271 18 C 0.093 3.907 19 N -0.318 5.318 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.129 0.871 26 H 0.101 0.899 27 H 0.210 0.790 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.992 -2.115 1.606 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.000 4.000 4 N -0.134 5.134 5 C -0.023 4.023 6 C -0.355 4.355 7 C 0.313 3.687 8 O -0.394 6.394 9 C -0.053 4.053 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.565 5.565 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.197 1.197 18 C -0.094 4.094 19 N -0.138 5.138 20 H 0.089 0.911 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.119 0.881 27 H 0.226 0.774 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -20.889 -2.407 2.038 21.125 hybrid contribution 1.672 0.547 -0.818 1.940 sum -19.216 -1.860 1.220 19.345 Atomic orbital electron populations 1.21677 0.92316 1.02992 1.03149 1.21750 0.98021 0.94708 1.02562 1.22368 0.71245 1.00031 1.06329 1.48932 1.08091 1.36975 1.19378 1.23536 0.89811 0.94410 0.94590 1.21193 0.94658 1.14748 1.04884 1.22162 0.90572 0.74669 0.81272 1.90329 1.89939 1.33440 1.25741 1.19358 0.90192 0.98131 0.97642 1.21452 0.91711 1.32284 1.12706 0.92558 1.25807 1.00698 0.95649 0.96794 1.70037 1.17676 1.40180 1.28625 0.85542 0.77735 0.78992 0.79026 1.19649 1.20055 1.19663 1.24385 0.95484 0.94977 0.94532 1.77006 1.01928 1.20596 1.14313 0.91073 0.91798 0.91486 0.92133 0.92334 0.85304 0.88093 0.77350 0.93846 0.93860 0.92495 0.78368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.91 71.98 0.71 -0.61 16 2 C -0.13 -1.97 6.11 30.60 0.19 -1.78 16 3 C 0.12 1.80 6.48 86.38 0.56 2.36 16 4 N -0.36 -9.08 3.64 -346.04 -1.26 -10.34 16 5 C 0.13 3.74 11.25 84.39 0.95 4.68 16 6 C -0.34 -12.81 6.10 -20.21 -0.12 -12.93 16 7 C 0.43 20.39 7.12 27.89 0.20 20.59 16 8 O -0.51 -26.66 16.01 -3.16 -0.05 -26.71 16 9 C -0.02 -0.87 4.94 29.10 0.14 -0.73 16 10 C -0.54 -32.63 8.92 25.60 0.23 -32.40 16 11 H 0.06 3.48 6.75 -2.91 -0.02 3.47 16 12 C 0.01 0.52 5.46 84.65 0.46 0.99 16 13 N -0.93 -55.37 13.29 21.44 0.28 -55.08 16 14 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 C 0.09 3.19 11.55 85.73 0.99 4.18 16 19 N -0.32 -9.92 12.32 -56.13 -0.69 -10.61 16 20 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 21 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.13 1.15 8.06 -2.39 -0.02 1.13 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.21 4.76 8.06 -2.91 -0.02 4.73 16 28 H 0.04 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 31 H 0.20 6.32 8.04 -2.91 -0.02 6.30 16 Total: -1.00 -72.50 278.33 5.73 -66.78 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.11 Total: 3.78 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.31 Total: -15.66 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.67 Total: -76.03 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.50 5.73 -66.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233403936.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.901 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds