Wall clock time and date at job start Mon Mar 30 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47329 * 2 1 4 4 C 1.34124 * 125.70470 * 124.99676 * 3 2 1 5 5 C 1.38447 * 107.36837 * 180.02562 * 4 3 2 6 6 C 1.46673 * 126.47694 * 180.02562 * 5 4 3 7 7 O 1.21319 * 119.99583 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00341 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.46862 * 35.00926 * 8 6 5 10 10 C 1.52997 * 109.47466 * 275.00371 * 8 6 5 11 11 C 1.50706 * 109.47178 * 154.99985 * 8 6 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 6 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.46754 * 90.00468 * 15 13 11 17 17 H 1.48498 * 109.47278 * 210.00299 * 15 13 11 18 18 H 1.48498 * 109.47109 * 330.00728 * 15 13 11 19 19 C 1.41558 * 107.05232 * 0.26954 * 5 4 3 20 20 N 1.30368 * 107.97785 * 359.54918 * 19 5 4 21 21 H 1.09000 * 109.46565 * 299.99361 * 1 2 3 22 22 H 1.08998 * 109.47443 * 60.00100 * 1 2 3 23 23 H 1.09003 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46952 * 240.00344 * 2 1 3 25 25 H 1.08993 * 109.47369 * 120.00401 * 2 1 3 26 26 H 1.08005 * 126.31531 * 0.02569 * 4 3 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 8 6 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 8 6 29 29 H 1.09004 * 109.47261 * 179.97438 * 10 8 6 30 30 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 31 31 H 1.08005 * 126.00836 * 179.69710 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8683 1.9110 0.8922 5 6 3.0704 3.2334 0.5357 6 6 3.9273 4.2019 1.2279 7 8 4.5450 3.8670 2.2169 8 6 4.0403 5.6128 0.7107 9 1 3.0811 5.9268 0.2991 10 6 5.1084 5.6709 -0.3832 11 6 4.4274 6.5324 1.8402 12 1 4.5770 6.1348 2.8331 13 6 4.5916 7.8811 1.6056 14 7 4.4099 8.3652 0.3964 15 14 5.0721 9.0208 3.0054 16 1 6.5524 9.1079 3.0869 17 1 4.5096 10.3728 2.7584 18 1 4.5365 8.4878 4.2838 19 6 2.2894 3.4759 -0.6197 20 7 1.6757 2.3684 -0.9303 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.3129 1.4001 1.7335 27 1 4.8284 5.0058 -1.2002 28 1 6.0676 5.3569 0.0285 29 1 5.1898 6.6914 -0.7577 30 1 4.5251 9.3141 0.2315 31 1 2.2168 4.4129 -1.1519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234186244.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:59 Heat of formation + Delta-G solvation = 28.417082 kcal Electronic energy + Delta-G solvation = -14729.882281 eV Core-core repulsion = 12206.053856 eV Total energy + Delta-G solvation = -2523.828425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96749 -37.89141 -34.44426 -33.63855 -30.65237 -30.28575 -29.08673 -25.08843 -24.32588 -23.14075 -21.05774 -20.30098 -18.46734 -16.76626 -16.12085 -15.49184 -14.87361 -14.51852 -14.27175 -13.85886 -13.48149 -13.12388 -12.64655 -12.38655 -12.22951 -12.21599 -11.62487 -11.39697 -11.01536 -10.72149 -10.60338 -10.40856 -10.15664 -9.96518 -9.31457 -8.88498 -8.42713 -8.25063 -8.19155 -5.96231 -4.00187 1.84182 2.53715 2.56840 3.37181 3.42818 3.48721 4.03578 4.38694 4.50258 4.76499 4.92052 5.01271 5.10803 5.35383 5.36931 5.53951 5.65236 5.81035 5.92005 5.95876 6.70198 6.77902 6.92778 7.04483 7.06907 7.12478 7.62333 7.85013 7.87345 8.09672 8.36114 8.87106 9.05380 9.64086 11.10706 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.055123 B = 0.006227 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.833773 B = 4495.447562 C = 4656.388362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.370 5.370 4 C 0.103 3.897 5 C -0.303 4.303 6 C 0.431 3.569 7 O -0.484 6.484 8 C 0.009 3.991 9 H 0.050 0.950 10 C -0.127 4.127 11 C -0.503 4.503 12 H 0.066 0.934 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.098 3.902 20 N -0.311 5.311 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.180 0.820 27 H 0.014 0.986 28 H 0.030 0.970 29 H 0.092 0.908 30 H 0.260 0.740 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -13.990 -2.456 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.150 5.150 4 C -0.046 4.046 5 C -0.315 4.315 6 C 0.310 3.690 7 O -0.360 6.360 8 C -0.010 4.010 9 H 0.068 0.932 10 C -0.185 4.185 11 C -0.541 4.541 12 H 0.085 0.915 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.089 4.089 20 N -0.131 5.131 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.197 0.803 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.454 -14.719 -2.853 16.323 hybrid contribution 0.767 1.001 1.198 1.739 sum -5.687 -13.718 -1.655 14.942 Atomic orbital electron populations 1.22049 0.93750 1.02657 1.03809 1.21703 0.96179 0.77686 1.03725 1.48541 1.35044 1.10324 1.21073 1.23212 0.92381 0.94493 0.94542 1.21622 1.11023 0.95515 1.03371 1.22445 0.75234 0.89960 0.81365 1.90355 1.40404 1.81080 1.24194 1.19063 0.97630 0.87978 0.96282 0.93191 1.21642 0.97508 1.03157 0.96160 1.21117 1.46346 0.91621 0.95030 0.91539 1.24927 0.95336 0.98066 0.95738 1.69865 1.50135 1.13480 1.19888 0.86514 0.78692 0.79753 0.82601 1.20680 1.21309 1.19869 1.24298 0.92875 0.96909 0.94868 1.77023 1.24866 0.97391 1.13790 0.92004 0.90945 0.90851 0.89752 0.88698 0.80255 0.96723 0.95119 0.88917 0.93005 0.78859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.09 37.16 0.37 -1.01 16 2 C 0.13 1.17 7.20 -4.04 -0.03 1.15 16 3 N -0.37 -5.24 3.64 -60.73 -0.22 -5.46 16 4 C 0.10 1.63 11.25 -16.47 -0.19 1.45 16 5 C -0.30 -5.81 6.11 -105.15 -0.64 -6.45 16 6 C 0.43 10.03 6.23 -30.91 -0.19 9.84 16 7 O -0.48 -12.35 16.36 5.52 0.09 -12.26 16 8 C 0.01 0.24 2.28 -92.92 -0.21 0.03 16 9 H 0.05 1.28 7.47 -51.93 -0.39 0.89 16 10 C -0.13 -3.05 8.95 37.16 0.33 -2.72 16 11 C -0.50 -14.35 8.33 -34.44 -0.29 -14.63 16 12 H 0.07 1.98 7.03 -52.49 -0.37 1.61 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.10 1.72 11.38 -16.91 -0.19 1.52 16 20 N -0.31 -5.12 12.32 30.91 0.38 -4.74 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.62 8.06 -51.93 -0.42 0.21 16 26 H 0.18 2.37 8.06 -52.48 -0.42 1.95 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.19 3.13 7.69 -52.48 -0.40 2.73 16 LS Contribution 273.16 15.07 4.12 4.12 Total: -1.00 -32.38 273.16 -5.14 -37.53 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.99 Total: -2.09 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.13 Total: -9.24 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.79 Total: -34.88 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.38 -5.14 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234186244.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.944 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds