Wall clock time and date at job start Mon Mar 30 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36011 * 117.00064 * 2 1 4 4 C 1.39271 * 120.38955 * 180.02562 * 3 2 1 5 5 C 1.38301 * 118.45776 * 179.72704 * 4 3 2 6 6 C 1.39089 * 119.15696 * 0.49838 * 5 4 3 7 7 N 1.39249 * 119.64905 * 179.77400 * 6 5 4 8 8 C 1.46494 * 119.99974 * 184.72524 * 7 6 5 9 9 C 1.46500 * 120.00006 * 4.72002 * 7 6 5 10 10 C 1.50706 * 109.46949 * 270.00432 * 9 7 6 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 N 1.32337 * 120.70218 * 359.48908 * 6 5 4 19 19 C 1.31997 * 121.67866 * 0.26459 * 18 6 5 20 20 H 1.08986 * 109.47209 * 299.99842 * 1 2 3 21 21 H 1.08998 * 109.47114 * 60.00406 * 1 2 3 22 22 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.76766 * 359.97438 * 4 3 2 24 24 H 1.08005 * 120.42285 * 180.26966 * 5 4 3 25 25 H 1.09001 * 109.47412 * 269.99394 * 8 7 6 26 26 H 1.09000 * 109.47567 * 29.99676 * 8 7 6 27 27 H 1.09002 * 109.47279 * 149.99124 * 8 7 6 28 28 H 1.09000 * 109.47175 * 150.00458 * 9 7 6 29 29 H 1.09001 * 109.47297 * 29.99965 * 9 7 6 30 30 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 31 31 H 1.07998 * 119.61145 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0227 2.5469 -0.0063 6 6 3.2097 3.6754 -0.0008 7 7 3.7888 4.9417 -0.0017 8 6 2.9442 6.1335 0.1085 9 6 5.2429 5.0821 -0.1129 10 6 5.8545 5.0794 1.2644 11 1 5.2230 4.9874 2.1356 12 6 7.2201 5.1998 1.4124 13 7 7.7538 5.1980 2.6144 14 14 8.3118 5.3668 -0.0941 15 1 8.4717 6.8038 -0.4327 16 1 9.6432 4.7744 0.1914 17 1 7.6883 4.6550 -1.2385 18 7 1.8915 3.5584 -0.0003 19 6 1.3003 2.3783 0.0002 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0431 0.4005 -0.0005 24 1 5.0981 2.6477 -0.0113 25 1 2.6529 6.4659 -0.8878 26 1 2.0519 5.8944 0.6871 27 1 3.4993 6.9273 0.6085 28 1 5.4800 6.0206 -0.6140 29 1 5.6451 4.2499 -0.6906 30 1 8.7145 5.2830 2.7186 31 1 0.2218 2.3217 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234862163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:11 Heat of formation + Delta-G solvation = 14.396211 kcal Electronic energy + Delta-G solvation = -14834.447374 eV Core-core repulsion = 12310.010959 eV Total energy + Delta-G solvation = -2524.436416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09692 -38.03279 -35.51160 -32.61989 -31.88793 -29.28888 -28.53218 -27.16352 -25.17122 -22.76576 -22.39766 -20.37924 -17.79670 -16.98024 -16.58713 -16.33931 -15.54820 -14.58083 -14.35077 -14.20035 -13.73057 -13.33482 -12.78895 -12.59742 -12.41986 -12.08026 -11.85368 -11.54795 -11.45171 -11.24130 -10.88930 -10.58863 -10.23692 -9.61911 -9.18948 -8.88021 -8.72536 -8.69014 -6.52062 -6.17709 -4.18669 1.74091 2.00440 3.19893 3.28023 3.28861 3.53458 3.87177 4.29489 4.43098 4.95742 5.07739 5.12881 5.21422 5.28188 5.48446 5.53362 5.76664 5.99581 6.14036 6.18434 6.34772 6.42260 6.45872 6.66688 6.74470 6.98167 7.47571 7.61370 7.69442 8.24412 8.39284 8.74079 8.91099 9.41631 10.95196 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039741 B = 0.007195 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.399947 B = 3890.530439 C = 4232.837561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C -0.011 4.011 4 C -0.065 4.065 5 C -0.185 4.185 6 C 0.391 3.609 7 N -0.591 5.591 8 C 0.108 3.892 9 C 0.224 3.776 10 C -0.538 4.538 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.893 5.893 14 Si 0.872 3.128 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.264 1.264 18 N -0.528 5.528 19 C 0.064 3.936 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.093 0.907 23 H 0.134 0.866 24 H 0.149 0.851 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -6.034 -6.748 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C -0.060 4.060 4 C -0.091 4.091 5 C -0.210 4.210 6 C 0.154 3.846 7 N -0.303 5.303 8 C -0.036 4.036 9 C 0.102 3.898 10 C -0.577 4.577 11 H 0.096 0.904 12 C -0.129 4.129 13 N -0.531 5.531 14 Si 0.699 3.301 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.189 1.189 18 N -0.247 5.247 19 C -0.094 4.094 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.111 0.889 23 H 0.152 0.848 24 H 0.166 0.834 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.923 -5.265 -6.649 13.829 hybrid contribution 0.958 -0.456 -0.533 1.188 sum -9.965 -5.721 -7.182 13.551 Atomic orbital electron populations 1.22913 0.79495 1.03204 1.00937 1.86008 1.20336 1.26670 1.90474 1.19591 0.92999 0.85145 1.08286 1.20617 0.91309 0.97991 0.99170 1.21543 1.01962 0.90524 1.06983 1.18347 0.87737 0.86649 0.91852 1.46535 1.06978 1.01225 1.75526 1.21372 0.94936 0.87491 0.99767 1.19722 0.75175 0.96980 0.97896 1.21471 0.92654 1.51388 0.92193 0.90448 1.24894 0.97804 0.94431 0.95777 1.69901 1.11982 1.49563 1.21606 0.86914 0.80599 0.79001 0.83630 1.19939 1.20858 1.18858 1.67029 1.10366 1.26713 1.20617 1.22307 0.99241 0.86695 1.01112 0.93086 0.93177 0.88859 0.84807 0.83364 0.94696 0.91746 0.91633 0.95268 0.95009 0.92420 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.73 10.51 -19.78 -0.21 -4.94 16 3 C -0.01 -0.19 6.71 -39.11 -0.26 -0.45 16 4 C -0.06 -1.13 10.12 -39.17 -0.40 -1.53 16 5 C -0.18 -3.70 9.19 -39.24 -0.36 -4.06 16 6 C 0.39 8.22 7.37 -154.85 -1.14 7.08 16 7 N -0.59 -12.78 2.98 -183.05 -0.55 -13.32 16 8 C 0.11 2.01 10.42 59.84 0.62 2.63 16 9 C 0.22 5.19 3.86 -5.19 -0.02 5.17 16 10 C -0.54 -14.71 9.90 -34.44 -0.34 -15.05 16 11 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 14 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 18 N -0.53 -10.30 9.16 -12.29 -0.11 -10.41 16 19 C 0.06 1.07 10.21 -17.40 -0.18 0.89 16 20 H 0.05 0.47 7.67 -51.94 -0.40 0.07 16 21 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 24 H 0.15 3.07 6.22 -52.48 -0.33 2.74 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.17 7.45 -51.93 -0.39 0.78 16 27 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 29 H 0.03 0.73 5.43 -51.93 -0.28 0.45 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.15 1.94 6.30 -52.49 -0.33 1.61 16 LS Contribution 264.93 15.07 3.99 3.99 Total: -1.00 -30.86 264.93 -5.74 -36.60 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.79 Total: 0.36 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.18 Total: -2.08 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.12 Total: -49.50 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.21 Total: -4.94 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.86 -5.74 -36.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234862163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.998 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds