Wall clock time and date at job start Mon Mar 30 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36011 * 117.00064 * 2 1 4 4 C 1.39271 * 120.38955 * 180.02562 * 3 2 1 5 5 C 1.38301 * 118.45776 * 179.72704 * 4 3 2 6 6 C 1.39089 * 119.15696 * 0.49838 * 5 4 3 7 7 N 1.39249 * 119.64905 * 179.77400 * 6 5 4 8 8 C 1.46494 * 119.99974 * 184.72524 * 7 6 5 9 9 C 1.46500 * 120.00006 * 4.72002 * 7 6 5 10 10 C 1.50706 * 109.46949 * 270.00432 * 9 7 6 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 N 1.32337 * 120.70218 * 359.48908 * 6 5 4 19 19 C 1.31997 * 121.67866 * 0.26459 * 18 6 5 20 20 H 1.08986 * 109.47209 * 299.99842 * 1 2 3 21 21 H 1.08998 * 109.47114 * 60.00406 * 1 2 3 22 22 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.76766 * 359.97438 * 4 3 2 24 24 H 1.08005 * 120.42285 * 180.26966 * 5 4 3 25 25 H 1.09001 * 109.47412 * 269.99394 * 8 7 6 26 26 H 1.09000 * 109.47567 * 29.99676 * 8 7 6 27 27 H 1.09002 * 109.47279 * 149.99124 * 8 7 6 28 28 H 1.09000 * 109.47175 * 150.00458 * 9 7 6 29 29 H 1.09001 * 109.47297 * 29.99965 * 9 7 6 30 30 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 31 31 H 1.07998 * 119.61145 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0227 2.5469 -0.0063 6 6 3.2097 3.6754 -0.0008 7 7 3.7888 4.9417 -0.0017 8 6 2.9442 6.1335 0.1085 9 6 5.2429 5.0821 -0.1129 10 6 5.8545 5.0794 1.2644 11 1 5.2230 4.9874 2.1356 12 6 7.2201 5.1998 1.4124 13 7 7.7538 5.1980 2.6144 14 14 8.3118 5.3668 -0.0941 15 1 8.4717 6.8038 -0.4327 16 1 9.6432 4.7744 0.1914 17 1 7.6883 4.6550 -1.2385 18 7 1.8915 3.5584 -0.0003 19 6 1.3003 2.3783 0.0002 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0431 0.4005 -0.0005 24 1 5.0981 2.6477 -0.0113 25 1 2.6529 6.4659 -0.8878 26 1 2.0519 5.8944 0.6871 27 1 3.4993 6.9273 0.6085 28 1 5.4800 6.0206 -0.6140 29 1 5.6451 4.2499 -0.6906 30 1 8.7145 5.2830 2.7186 31 1 0.2218 2.3217 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234862163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:11 Heat of formation + Delta-G solvation = -5.867397 kcal Electronic energy + Delta-G solvation = -14835.326070 eV Core-core repulsion = 12310.010959 eV Total energy + Delta-G solvation = -2525.315112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46165 -39.32019 -37.07051 -34.64496 -33.34185 -30.78950 -30.24548 -28.14285 -26.78565 -24.44962 -23.83577 -21.95916 -19.08876 -19.02661 -17.99390 -17.81480 -16.63822 -16.39548 -15.76579 -15.66609 -15.23048 -14.79482 -14.36107 -14.15561 -13.91729 -13.52190 -13.40805 -13.14599 -12.65635 -12.62802 -12.37770 -12.26912 -11.95585 -11.71589 -10.81221 -10.65651 -10.30770 -10.18239 -8.31347 -8.02792 -6.37920 0.32412 0.57921 1.38768 1.40066 1.50587 2.24326 2.33640 2.53269 2.98280 3.02807 3.65608 3.86925 4.07835 4.26529 4.48995 4.50065 4.53909 4.66365 4.74609 4.80815 4.82427 4.91825 4.98696 5.00005 5.14241 5.44815 5.55401 5.97664 6.36906 6.43727 6.66397 6.71116 7.19625 7.32788 8.86047 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039741 B = 0.007195 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.399947 B = 3890.530439 C = 4232.837561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.001 3.999 4 C -0.068 4.068 5 C -0.207 4.207 6 C 0.364 3.636 7 N -0.608 5.608 8 C 0.110 3.890 9 C 0.234 3.766 10 C -0.540 4.540 11 H 0.024 0.976 12 C 0.015 3.985 13 N -0.945 5.945 14 Si 0.947 3.053 15 H -0.262 1.262 16 H -0.282 1.282 17 H -0.241 1.241 18 N -0.536 5.536 19 C 0.063 3.937 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.121 0.879 23 H 0.154 0.846 24 H 0.133 0.867 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.268 0.732 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 -6.962 -8.725 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C -0.048 4.048 4 C -0.094 4.094 5 C -0.232 4.232 6 C 0.129 3.871 7 N -0.321 5.321 8 C -0.033 4.033 9 C 0.112 3.888 10 C -0.578 4.578 11 H 0.042 0.958 12 C -0.183 4.183 13 N -0.585 5.585 14 Si 0.769 3.231 15 H -0.187 1.187 16 H -0.208 1.208 17 H -0.164 1.164 18 N -0.255 5.255 19 C -0.095 4.095 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.139 0.861 23 H 0.172 0.828 24 H 0.150 0.850 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.169 -6.210 -8.637 16.163 hybrid contribution 1.108 -0.332 0.177 1.170 sum -11.060 -6.542 -8.460 15.385 Atomic orbital electron populations 1.23315 0.76742 1.05580 1.02075 1.86017 1.23113 1.25338 1.89983 1.19638 0.92794 0.86107 1.06308 1.20850 0.92404 0.97782 0.98400 1.21490 1.01285 0.91544 1.08847 1.18528 0.88592 0.86603 0.93349 1.46517 1.06468 1.02349 1.76811 1.21427 0.94369 0.86499 1.00974 1.19468 0.76452 0.97681 0.95226 1.21616 0.92523 1.50955 0.92738 0.95751 1.25855 0.99407 0.93799 0.99269 1.70069 1.12541 1.51380 1.24532 0.85727 0.77985 0.79723 0.79658 1.18685 1.20795 1.16448 1.67053 1.09662 1.28162 1.20622 1.22908 1.00921 0.85894 0.99731 0.92134 0.91714 0.86093 0.82841 0.84959 0.92472 0.91794 0.92241 0.93872 0.94317 0.92255 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.39 16 2 O -0.33 -8.72 10.51 -93.68 -0.98 -9.70 16 3 C 0.00 0.02 6.71 22.57 0.15 0.17 16 4 C -0.07 -2.32 10.12 22.53 0.23 -2.10 16 5 C -0.21 -8.31 9.19 22.49 0.21 -8.10 16 6 C 0.36 15.30 7.37 132.99 0.98 16.28 16 7 N -0.61 -26.41 2.98 -733.06 -2.18 -28.60 16 8 C 0.11 4.07 10.42 127.77 1.33 5.40 16 9 C 0.23 10.86 3.86 85.63 0.33 11.20 16 10 C -0.54 -30.45 9.90 25.60 0.25 -30.20 16 11 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 12 C 0.02 0.85 5.47 84.66 0.46 1.31 16 13 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 14 Si 0.95 41.60 27.47 68.60 1.88 43.48 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 18 N -0.54 -20.29 9.16 -192.78 -1.77 -22.05 16 19 C 0.06 1.95 10.21 84.72 0.87 2.82 16 20 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 21 H 0.06 0.88 7.67 -2.39 -0.02 0.86 16 22 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.15 4.47 8.06 -2.91 -0.02 4.44 16 24 H 0.13 5.63 6.22 -2.91 -0.02 5.61 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 2.31 7.45 -2.39 -0.02 2.29 16 27 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.04 1.88 7.50 -2.39 -0.02 1.86 16 29 H 0.04 1.75 5.43 -2.39 -0.01 1.74 16 30 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 31 H 0.18 4.16 6.30 -2.91 -0.02 4.15 16 Total: -1.00 -68.36 264.93 4.24 -64.12 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.07 Total: 12.33 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.92 Total: -1.83 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.65 Total: -108.40 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.98 Total: -9.70 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.48 kcal Total: -68.36 4.24 -64.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234862163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.257 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds