Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46966 * 2 1 4 4 C 1.50699 * 109.47070 * 120.00601 * 2 1 3 5 5 H 1.08000 * 120.00376 * 120.00069 * 4 2 1 6 6 C 1.37879 * 119.99568 * 300.00124 * 4 2 1 7 7 N 1.31518 * 119.99783 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46991 * 90.00245 * 8 6 4 10 10 H 1.48493 * 109.47394 * 210.00531 * 8 6 4 11 11 H 1.48507 * 109.46714 * 330.00770 * 8 6 4 12 12 C 1.52998 * 109.46808 * 240.00297 * 2 1 3 13 13 C 1.50699 * 109.47532 * 65.00421 * 12 2 1 14 14 N 1.31125 * 126.55279 * 90.24196 * 13 12 2 15 15 C 1.34497 * 105.61652 * 180.12513 * 14 13 12 16 16 C 1.50695 * 126.29455 * 179.90497 * 15 14 13 17 17 C 1.53002 * 117.50044 * 119.71205 * 16 15 14 18 18 C 1.53000 * 60.02940 * 107.50594 * 17 16 15 19 19 N 1.29947 * 107.42067 * 359.64626 * 15 14 13 20 20 O 1.21300 * 110.25569 * 0.22590 * 19 15 14 21 21 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47265 * 299.99560 * 1 2 3 23 23 H 1.09006 * 109.47233 * 59.99908 * 1 2 3 24 24 H 0.96998 * 119.99880 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47686 * 304.99677 * 12 2 1 26 26 H 1.09005 * 109.46746 * 185.00283 * 12 2 1 27 27 H 1.08999 * 115.55804 * 334.03041 * 16 15 14 28 28 H 1.09002 * 117.49918 * 0.02562 * 17 16 15 29 29 H 1.09002 * 117.49754 * 215.00777 * 17 16 15 30 30 H 1.09008 * 117.49673 * 107.47884 * 18 17 16 31 31 H 1.08999 * 117.49942 * 252.47315 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 2.1379 -0.8593 3.5565 8 14 0.6258 1.2796 2.6542 9 1 -0.8022 0.8743 2.6993 10 1 0.9771 1.9951 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0399 -0.7212 -1.2493 13 6 1.6413 0.0572 -2.4766 14 7 2.3369 1.0020 -3.0622 15 6 1.5918 1.4057 -4.1066 16 6 1.9538 2.4816 -5.0977 17 6 2.0647 2.0782 -6.5694 18 6 0.8764 2.9167 -6.0941 19 7 0.5048 0.6936 -4.1074 20 8 0.5136 -0.0871 -3.1791 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.9038 -0.5278 4.4375 25 1 1.6053 -1.7198 -1.2953 26 1 3.1263 -0.7995 -1.2056 27 1 2.6396 3.2460 -4.7323 28 1 1.8754 1.0346 -6.8208 29 1 2.8237 2.5770 -7.1721 30 1 0.8538 3.9673 -6.3840 31 1 -0.0944 2.4248 -6.0333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235089070.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 85.674508 kcal Electronic energy + Delta-G solvation = -14829.889331 eV Core-core repulsion = 12308.543774 eV Total energy + Delta-G solvation = -2521.345557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.22816 -37.71604 -35.98598 -34.76010 -32.40236 -31.02591 -27.23616 -25.23101 -25.04526 -23.09583 -22.57228 -20.65648 -19.52539 -17.73620 -17.44481 -16.69024 -15.63085 -14.93763 -14.84771 -13.84114 -13.77801 -12.91433 -12.71172 -12.32158 -12.13296 -11.92942 -11.82467 -11.71868 -11.24515 -10.86390 -10.79360 -10.63794 -10.42116 -10.30970 -10.01101 -9.58062 -9.23649 -9.15262 -8.62478 -6.15151 -4.16436 1.47829 2.44322 3.24068 3.25362 3.36037 3.37503 3.63592 3.73332 4.30396 4.35403 4.64386 4.78057 4.83565 5.17738 5.38704 5.48280 5.56744 5.78217 5.84788 5.88711 5.92353 5.99963 6.22240 6.32113 6.39808 6.55885 6.68219 6.97561 7.32575 7.61918 8.38209 8.50515 8.86013 9.46041 10.97413 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.052158 B = 0.006449 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.701757 B = 4340.876267 C = 4484.470450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.015 3.985 3 H 0.036 0.964 4 C -0.517 4.517 5 H 0.080 0.920 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C -0.016 4.016 13 C 0.212 3.788 14 N -0.492 5.492 15 C 0.194 3.806 16 C -0.074 4.074 17 C -0.158 4.158 18 C -0.161 4.161 19 N -0.399 5.399 20 O 0.069 5.931 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.024 0.976 24 H 0.266 0.734 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.134 0.866 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 4.854 -15.754 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.005 4.005 3 H 0.054 0.946 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C -0.055 4.055 13 C -0.007 4.007 14 N -0.225 5.225 15 C -0.079 4.079 16 C -0.093 4.093 17 C -0.196 4.196 18 C -0.198 4.198 19 N -0.110 5.110 20 O 0.013 5.987 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.012 5.192 -16.191 17.121 hybrid contribution -0.631 0.741 0.467 1.079 sum -2.643 5.933 -15.724 17.012 Atomic orbital electron populations 1.22266 0.98887 1.01242 0.98633 1.19204 0.92126 0.97031 0.92105 0.94637 1.20837 1.32678 1.13876 0.88103 0.90201 1.24940 0.95521 0.96513 0.95776 1.69877 1.45238 1.40217 0.98004 0.86858 0.80622 0.83797 0.77012 1.20499 1.22365 1.19257 1.20608 1.03078 0.97239 0.84594 1.29575 0.81438 0.93613 0.96057 1.71884 1.29980 1.12774 1.07851 1.24725 0.88166 0.99012 0.95970 1.20016 1.04564 0.96977 0.87771 1.23048 1.01049 1.01401 0.94143 1.23065 0.94679 1.00967 1.01137 1.74484 1.22221 1.06419 1.07848 1.85291 1.38790 1.45367 1.29236 0.92200 0.93890 0.95675 0.92453 0.88516 0.87444 0.84859 0.88531 0.87550 0.87643 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.49 37.16 0.32 -2.94 16 2 C 0.02 0.34 1.88 -91.77 -0.17 0.17 16 3 H 0.04 0.85 7.20 -51.93 -0.37 0.47 16 4 C -0.52 -13.67 9.14 -34.44 -0.31 -13.98 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 8 Si 0.89 21.71 24.37 -169.99 -4.14 17.57 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.25 16 10 H -0.30 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 12 C -0.02 -0.30 5.25 -27.88 -0.15 -0.44 16 13 C 0.21 3.90 6.92 -13.06 -0.09 3.81 16 14 N -0.49 -9.23 11.55 -9.87 -0.11 -9.34 16 15 C 0.19 3.28 7.74 -156.37 -1.21 2.07 16 16 C -0.07 -0.94 6.33 -91.74 -0.58 -1.52 16 17 C -0.16 -1.58 10.23 -26.73 -0.27 -1.85 16 18 C -0.16 -1.65 10.15 -26.70 -0.27 -1.92 16 19 N -0.40 -7.03 11.77 30.90 0.36 -6.67 16 20 O 0.07 1.25 10.75 18.09 0.19 1.44 16 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 23 H 0.02 0.48 6.93 -51.93 -0.36 0.12 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 27 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.10 1.18 7.92 -51.93 -0.41 0.76 16 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -29.92 263.11 -5.68 -35.59 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -3.87 Total: -2.18 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.84 Total: -14.61 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.02 Total: -41.78 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.19 Total: 1.44 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.92 -5.68 -35.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235089070.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.267 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds