Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46966 * 2 1 4 4 C 1.50699 * 109.47070 * 120.00601 * 2 1 3 5 5 H 1.08000 * 120.00376 * 120.00069 * 4 2 1 6 6 C 1.37879 * 119.99568 * 300.00124 * 4 2 1 7 7 N 1.31518 * 119.99783 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46991 * 90.00245 * 8 6 4 10 10 H 1.48493 * 109.47394 * 210.00531 * 8 6 4 11 11 H 1.48507 * 109.46714 * 330.00770 * 8 6 4 12 12 C 1.52998 * 109.46808 * 240.00297 * 2 1 3 13 13 C 1.50699 * 109.47532 * 65.00421 * 12 2 1 14 14 N 1.31125 * 126.55279 * 90.24196 * 13 12 2 15 15 C 1.34497 * 105.61652 * 180.12513 * 14 13 12 16 16 C 1.50695 * 126.29455 * 179.90497 * 15 14 13 17 17 C 1.53002 * 117.50044 * 119.71205 * 16 15 14 18 18 C 1.53000 * 60.02940 * 107.50594 * 17 16 15 19 19 N 1.29947 * 107.42067 * 359.64626 * 15 14 13 20 20 O 1.21300 * 110.25569 * 0.22590 * 19 15 14 21 21 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47265 * 299.99560 * 1 2 3 23 23 H 1.09006 * 109.47233 * 59.99908 * 1 2 3 24 24 H 0.96998 * 119.99880 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47686 * 304.99677 * 12 2 1 26 26 H 1.09005 * 109.46746 * 185.00283 * 12 2 1 27 27 H 1.08999 * 115.55804 * 334.03041 * 16 15 14 28 28 H 1.09002 * 117.49918 * 0.02562 * 17 16 15 29 29 H 1.09002 * 117.49754 * 215.00777 * 17 16 15 30 30 H 1.09008 * 117.49673 * 107.47884 * 18 17 16 31 31 H 1.08999 * 117.49942 * 252.47315 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 2.1379 -0.8593 3.5565 8 14 0.6258 1.2796 2.6542 9 1 -0.8022 0.8743 2.6993 10 1 0.9771 1.9951 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0399 -0.7212 -1.2493 13 6 1.6413 0.0572 -2.4766 14 7 2.3369 1.0020 -3.0622 15 6 1.5918 1.4057 -4.1066 16 6 1.9538 2.4816 -5.0977 17 6 2.0647 2.0782 -6.5694 18 6 0.8764 2.9167 -6.0941 19 7 0.5048 0.6936 -4.1074 20 8 0.5136 -0.0871 -3.1791 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.9038 -0.5278 4.4375 25 1 1.6053 -1.7198 -1.2953 26 1 3.1263 -0.7995 -1.2056 27 1 2.6396 3.2460 -4.7323 28 1 1.8754 1.0346 -6.8208 29 1 2.8237 2.5770 -7.1721 30 1 0.8538 3.9673 -6.3840 31 1 -0.0944 2.4248 -6.0333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235089070.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = 65.786556 kcal Electronic energy + Delta-G solvation = -14830.751737 eV Core-core repulsion = 12308.543774 eV Total energy + Delta-G solvation = -2522.207963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.58863 -38.65921 -37.65670 -36.15827 -34.24773 -32.66548 -28.80331 -27.15752 -26.25245 -24.48130 -23.35871 -22.16740 -20.99367 -19.18080 -18.90764 -18.44715 -16.82012 -16.65793 -16.01385 -15.46366 -15.22519 -14.81812 -14.23875 -13.88221 -13.44610 -13.35178 -13.09047 -13.00517 -12.53124 -12.48109 -12.33744 -12.09257 -11.87357 -11.64948 -11.52594 -11.28947 -11.14335 -10.74229 -10.59163 -8.29803 -6.33550 0.09593 1.13582 1.30005 1.36729 1.44850 1.83622 2.31618 2.53887 2.76416 3.06321 3.12069 3.72373 3.80837 3.96557 4.15026 4.22536 4.38658 4.51657 4.65868 4.66865 4.79518 4.82153 4.85420 4.95680 5.02360 5.07180 5.14232 5.26134 5.55988 5.62056 6.26105 6.73334 7.13736 7.32023 8.86040 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.052158 B = 0.006449 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.701757 B = 4340.876267 C = 4484.470450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.016 3.984 3 H 0.022 0.978 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.939 3.061 9 H -0.266 1.266 10 H -0.299 1.299 11 H -0.260 1.260 12 C -0.008 4.008 13 C 0.211 3.789 14 N -0.511 5.511 15 C 0.194 3.806 16 C -0.105 4.105 17 C -0.141 4.141 18 C -0.148 4.148 19 N -0.409 5.409 20 O 0.064 5.936 21 H 0.070 0.930 22 H 0.031 0.969 23 H 0.041 0.959 24 H 0.267 0.733 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 6.126 -17.766 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 H 0.040 0.960 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.582 5.582 8 Si 0.768 3.232 9 H -0.192 1.192 10 H -0.227 1.227 11 H -0.185 1.185 12 C -0.047 4.047 13 C -0.009 4.009 14 N -0.245 5.245 15 C -0.078 4.078 16 C -0.124 4.124 17 C -0.179 4.179 18 C -0.186 4.186 19 N -0.121 5.121 20 O 0.010 5.990 21 H 0.089 0.911 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.162 0.838 28 H 0.105 0.895 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.662 6.451 -18.218 19.509 hybrid contribution -0.376 0.317 1.007 1.121 sum -3.038 6.768 -17.211 18.741 Atomic orbital electron populations 1.22183 0.97580 1.02111 0.98799 1.19078 0.93119 0.96052 0.92148 0.96015 1.21130 1.31327 1.12916 0.89670 0.92622 1.25667 0.97015 0.99225 0.95675 1.69999 1.47369 1.42211 0.98596 0.85991 0.79623 0.80720 0.76897 1.19213 1.22656 1.18457 1.20410 1.03371 0.97722 0.83152 1.29379 0.81748 0.93635 0.96121 1.71899 1.30741 1.13095 1.08761 1.25467 0.87353 0.99144 0.95839 1.20343 1.06867 0.96888 0.88348 1.23169 1.01538 1.01243 0.91948 1.23167 0.93654 1.02571 0.99163 1.74479 1.22721 1.06914 1.08004 1.85273 1.38595 1.45704 1.29424 0.91081 0.95051 0.94019 0.92427 0.86521 0.87114 0.83783 0.89522 0.84547 0.84757 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 8.49 71.98 0.61 -5.46 16 2 C 0.02 0.70 1.88 -11.54 -0.02 0.68 16 3 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 4 C -0.51 -27.17 9.14 25.60 0.23 -26.93 16 5 H 0.06 3.15 7.99 -2.91 -0.02 3.13 16 6 C 0.02 1.25 5.45 84.65 0.46 1.71 16 7 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 8 Si 0.94 44.43 24.37 68.60 1.67 46.10 16 9 H -0.27 -11.98 6.87 99.48 0.68 -11.30 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 11 H -0.26 -11.85 6.53 99.48 0.65 -11.20 16 12 C -0.01 -0.28 5.25 29.85 0.16 -0.12 16 13 C 0.21 7.46 6.92 88.38 0.61 8.07 16 14 N -0.51 -18.56 11.55 -303.18 -3.50 -22.06 16 15 C 0.19 6.27 7.74 138.46 1.07 7.34 16 16 C -0.10 -2.42 6.33 -11.52 -0.07 -2.49 16 17 C -0.14 -2.38 10.23 30.60 0.31 -2.07 16 18 C -0.15 -2.59 10.15 30.62 0.31 -2.28 16 19 N -0.41 -13.83 11.77 -60.31 -0.71 -14.54 16 20 O 0.06 2.21 10.75 74.80 0.80 3.01 16 21 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 22 H 0.03 1.34 3.27 -2.39 -0.01 1.33 16 23 H 0.04 1.53 6.93 -2.38 -0.02 1.52 16 24 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.12 3.67 8.14 -2.38 -0.02 3.65 16 26 H 0.11 3.86 8.14 -2.38 -0.02 3.84 16 27 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16 Total: -1.00 -63.73 263.11 3.29 -60.45 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.05 Total: 5.01 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.68 Total: -21.55 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.91 Total: -93.02 kcal Atomic # 8 Polarization: 2.21 SS G_CDS: 0.80 Total: 3.01 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.67 Total: 46.10 kcal Total: -63.73 3.29 -60.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235089070.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.232 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds