Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43539 * 2 1 4 4 C 1.54885 * 110.49070 * 237.45477 * 2 1 3 5 5 C 1.54882 * 102.75201 * 203.38172 * 4 2 1 6 6 C 1.54266 * 104.19744 * 37.94014 * 5 4 2 7 7 H 1.08994 * 110.03678 * 95.67876 * 6 5 4 8 8 C 1.50706 * 110.03343 * 217.06068 * 6 5 4 9 9 N 1.30448 * 126.07212 * 58.56781 * 8 6 5 10 10 O 1.21277 * 110.68344 * 180.02562 * 9 8 6 11 11 C 1.34754 * 109.53712 * 359.97438 * 10 9 8 12 12 C 1.40336 * 126.79837 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00062 * 180.02562 * 12 11 10 14 14 C 1.40457 * 120.00139 * 0.03149 * 12 11 10 15 15 N 1.30515 * 119.99902 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00468 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46623 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46864 * 119.99663 * 16 14 12 19 19 H 1.48491 * 109.47435 * 239.99946 * 16 14 12 20 20 N 1.33335 * 106.40565 * 359.74393 * 11 10 9 21 21 C 1.54089 * 106.61951 * 336.27954 * 6 5 4 22 22 H 1.09002 * 109.47153 * 179.30263 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.30454 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.30435 * 1 2 3 25 25 H 1.09006 * 110.75074 * 321.69418 * 4 2 1 26 26 H 1.08995 * 110.75943 * 85.06188 * 4 2 1 27 27 H 1.08999 * 110.49039 * 156.61872 * 5 4 2 28 28 H 1.09003 * 110.48500 * 279.12823 * 5 4 2 29 29 H 0.96996 * 119.99948 * 180.02562 * 15 14 12 30 30 H 1.08998 * 110.16104 * 240.87842 * 21 6 5 31 31 H 1.09007 * 110.00311 * 119.38731 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7805 -1.2230 5 6 3.4907 -1.1970 -0.7613 6 6 3.3165 -1.5414 0.7323 7 1 3.1693 -2.6145 0.8534 8 6 4.5285 -1.0961 1.5095 9 7 4.9894 0.1221 1.5823 10 8 5.9779 0.1649 2.2835 11 6 6.2562 -1.0698 2.7461 12 6 7.3196 -1.4326 3.5868 13 1 7.4400 -2.4617 3.8918 14 6 8.2273 -0.4575 4.0318 15 7 8.0820 0.7860 3.6630 16 14 9.6425 -0.9403 5.1515 17 1 9.5854 -2.3997 5.4201 18 1 10.9309 -0.6089 4.4917 19 1 9.5364 -0.1963 6.4323 20 7 5.3181 -1.8777 2.2509 21 6 2.0699 -0.7772 1.2183 22 1 -0.3633 -1.0276 -0.0125 23 1 -0.3633 0.5246 -0.8837 24 1 -0.3634 0.5030 0.8962 25 1 1.4581 -1.6584 -1.4241 26 1 2.1252 -0.1358 -2.1002 27 1 3.8316 -2.0706 -1.3169 28 1 4.1903 -0.3704 -0.8853 29 1 8.7090 1.4593 3.9700 30 1 2.3411 -0.0831 2.0137 31 1 1.3175 -1.4802 1.5761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235320798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = 0.079267 kcal Electronic energy + Delta-G solvation = -14983.436156 eV Core-core repulsion = 12458.378911 eV Total energy + Delta-G solvation = -2525.057245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.03645 -39.50444 -36.07782 -35.55480 -33.01440 -31.52056 -29.68717 -28.47885 -26.19097 -23.67841 -23.42435 -21.36828 -20.78477 -19.21226 -17.83331 -17.45102 -17.13087 -16.26753 -15.85504 -15.03696 -14.78154 -14.44980 -13.82550 -13.62333 -13.52845 -13.10857 -12.89385 -12.81612 -12.23124 -12.18348 -11.93870 -11.84929 -11.76873 -11.61817 -11.50622 -11.40701 -11.24404 -10.95181 -10.23147 -8.96938 -7.10583 0.98579 1.39551 1.54487 1.61576 2.02822 2.14523 3.00150 3.19355 3.44138 3.62052 3.68638 4.03202 4.19641 4.41030 4.48745 4.49828 4.63958 4.69702 4.79512 4.89706 4.92438 5.02058 5.07259 5.12538 5.27117 5.35099 5.41912 5.53182 5.60685 5.87141 6.08530 6.29879 6.44637 8.05988 8.33541 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.073781 B = 0.006091 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.410344 B = 4595.668546 C = 4662.819099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.055 0.945 4 C -0.102 4.102 5 C -0.112 4.112 6 C 0.001 3.999 7 H 0.093 0.907 8 C 0.176 3.824 9 N -0.492 5.492 10 O 0.008 5.992 11 C 0.268 3.732 12 C -0.436 4.436 13 H 0.121 0.879 14 C 0.028 3.972 15 N -0.798 5.798 16 Si 1.024 2.976 17 H -0.247 1.247 18 H -0.256 1.256 19 H -0.256 1.256 20 N -0.646 5.646 21 C -0.102 4.102 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.306 0.694 30 H 0.031 0.969 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 -1.930 -3.982 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.073 0.927 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.019 4.019 7 H 0.112 0.888 8 C -0.098 4.098 9 N -0.227 5.227 10 O -0.033 6.033 11 C 0.079 3.921 12 C -0.473 4.473 13 H 0.138 0.862 14 C -0.194 4.194 15 N -0.425 5.425 16 Si 0.840 3.160 17 H -0.170 1.170 18 H -0.180 1.180 19 H -0.180 1.180 20 N -0.391 5.391 21 C -0.141 4.141 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.294 -1.427 -4.387 8.630 hybrid contribution 1.021 0.180 0.716 1.260 sum -6.273 -1.248 -3.671 7.374 Atomic orbital electron populations 1.21750 0.92559 1.02761 1.02131 1.21937 0.97064 0.98329 0.93945 0.92655 1.22522 0.93629 1.00602 0.97191 1.22385 0.99122 1.00909 0.92658 1.20261 0.87522 1.00413 0.93751 0.88848 1.25814 0.99370 0.86806 0.97847 1.74187 1.05121 1.22883 1.20535 1.85471 1.34731 1.32608 1.50481 1.24874 0.94767 0.79156 0.93303 1.19159 1.05459 0.98464 1.24236 0.86168 1.27426 1.01699 0.93330 0.96915 1.69706 1.34840 1.03434 1.34521 0.84551 0.74482 0.80414 0.76583 1.17021 1.17995 1.18012 1.72237 1.10928 1.31716 1.24246 1.22249 0.95206 0.98467 0.98169 0.91250 0.91190 0.92982 0.88811 0.90101 0.90419 0.94011 0.88290 0.95044 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.11 71.98 0.66 -2.05 16 2 C -0.09 -2.59 3.45 -9.72 -0.03 -2.62 16 3 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 4 C -0.10 -2.52 6.33 31.88 0.20 -2.32 16 5 C -0.11 -3.78 6.35 31.67 0.20 -3.58 16 6 C 0.00 0.03 3.45 -10.74 -0.04 -0.01 16 7 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 8 C 0.18 9.36 6.41 138.61 0.89 10.25 16 9 N -0.49 -28.56 11.93 -56.63 -0.68 -29.24 16 10 O 0.01 0.49 9.74 64.21 0.63 1.12 16 11 C 0.27 16.26 7.82 85.06 0.66 16.93 16 12 C -0.44 -24.02 9.48 23.32 0.22 -23.80 16 13 H 0.12 6.20 7.85 -2.91 -0.02 6.18 16 14 C 0.03 1.37 5.50 85.43 0.47 1.84 16 15 N -0.80 -41.82 12.06 21.91 0.26 -41.55 16 16 Si 1.02 35.36 29.56 68.60 2.03 37.39 16 17 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 18 H -0.26 -8.30 7.11 99.48 0.71 -7.60 16 19 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 20 N -0.65 -37.82 11.61 -305.23 -3.54 -41.37 16 21 C -0.10 -3.50 6.03 31.39 0.19 -3.31 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.09 1.85 8.06 -2.38 -0.02 1.83 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 1.65 7.70 -2.39 -0.02 1.63 16 29 H 0.31 13.89 8.29 -92.71 -0.77 13.12 16 30 H 0.03 1.28 7.65 -2.39 -0.02 1.26 16 31 H 0.09 2.53 7.83 -2.38 -0.02 2.51 16 Total: -1.00 -69.06 264.51 3.24 -65.82 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.12 Total: 16.49 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 3.42 Total: -8.66 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -3.95 Total: -112.16 kcal Atomic # 8 Polarization: 0.49 SS G_CDS: 0.63 Total: 1.12 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -69.06 3.24 -65.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235320798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.902 kcal (2) G-P(sol) polarization free energy of solvation -69.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds