Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.43922 * 2 1 4 4 C 1.54266 * 110.48788 * 237.30783 * 2 1 3 5 5 C 1.53869 * 106.60080 * 217.71703 * 4 2 1 6 6 C 1.54266 * 106.60029 * 359.97438 * 5 4 2 7 7 H 1.08995 * 110.48742 * 264.92973 * 6 5 4 8 8 C 1.50704 * 110.48507 * 142.42289 * 6 5 4 9 9 N 1.30449 * 126.07155 * 301.47583 * 8 6 5 10 10 O 1.21283 * 110.68435 * 180.02562 * 9 8 6 11 11 C 1.34752 * 109.53237 * 0.02562 * 10 9 8 12 12 C 1.40340 * 126.79666 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00522 * 179.97438 * 12 11 10 14 14 C 1.40461 * 119.99594 * 359.97438 * 12 11 10 15 15 N 1.30513 * 120.00517 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00074 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46628 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47218 * 119.99579 * 16 14 12 19 19 H 1.48496 * 109.47259 * 240.00087 * 16 14 12 20 20 N 1.33329 * 106.41072 * 359.73619 * 11 10 9 21 21 C 1.54891 * 104.19455 * 23.61419 * 6 5 4 22 22 H 1.09006 * 109.46718 * 297.46665 * 1 2 3 23 23 H 1.09001 * 109.46749 * 57.46201 * 1 2 3 24 24 H 1.08998 * 109.46996 * 177.46611 * 1 2 3 25 25 H 1.08999 * 110.03333 * 98.42803 * 4 2 1 26 26 H 1.09009 * 110.02965 * 337.00072 * 4 2 1 27 27 H 1.09000 * 110.03397 * 240.71393 * 5 4 2 28 28 H 1.09001 * 110.03290 * 119.28917 * 5 4 2 29 29 H 0.96992 * 120.00622 * 180.02562 * 15 14 12 30 30 H 1.08997 * 110.75776 * 80.37124 * 21 6 5 31 31 H 1.08994 * 110.75338 * 203.74411 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0700 -0.7805 -1.2162 5 6 3.3165 -1.5416 -0.7319 6 6 3.4910 -1.1966 0.7615 7 1 4.1903 -0.3693 0.8827 8 6 3.9654 -2.4033 1.5297 9 7 3.3518 -3.5515 1.6116 10 8 3.9807 -4.3249 2.3025 11 6 5.1011 -3.7228 2.7476 12 6 6.0865 -4.2856 3.5732 13 1 6.9458 -3.7000 3.8647 14 6 5.9552 -5.6106 4.0204 15 7 4.9166 -6.3183 3.6686 16 14 7.2665 -6.3596 5.1201 17 1 8.3328 -5.3572 5.3720 18 1 6.6560 -6.7685 6.4105 19 1 7.8534 -7.5485 4.4513 20 7 5.0908 -2.4884 2.2439 21 6 2.0725 -0.7796 1.2233 22 1 -0.3633 0.4740 0.9119 23 1 -0.3633 0.5528 -0.8664 24 1 -0.3633 -1.0266 -0.0454 25 1 2.3413 -0.0886 -2.0134 26 1 1.3175 -1.4844 -1.5721 27 1 4.1928 -1.2190 -1.2941 28 1 3.1691 -2.6148 -0.8529 29 1 4.8257 -7.2331 3.9777 30 1 1.4584 -1.6572 1.4250 31 1 2.1259 -0.1344 2.1001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235323866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = 19.926225 kcal Electronic energy + Delta-G solvation = -14948.313159 eV Core-core repulsion = 12424.116542 eV Total energy + Delta-G solvation = -2524.196616 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.95901 -38.16993 -34.07292 -33.62931 -31.38045 -29.88275 -28.27107 -26.41564 -24.96702 -21.80190 -21.56215 -19.71544 -19.42931 -17.30745 -15.87100 -15.59222 -15.41908 -14.94415 -14.02049 -13.60346 -13.23023 -13.05521 -12.77001 -11.97104 -11.71787 -11.56218 -11.48091 -11.26597 -10.84278 -10.61886 -10.51359 -10.43419 -10.36565 -10.18056 -9.89583 -9.87123 -9.35898 -8.83572 -8.16885 -7.05613 -4.98183 2.79676 2.97598 3.05294 3.32273 3.75638 3.93730 4.79718 4.89743 4.95238 5.10248 5.31937 5.50956 5.55766 5.63293 5.71286 5.82500 5.86216 5.95895 6.08174 6.10795 6.20537 6.29606 6.31538 6.50404 6.59989 6.67092 6.87067 6.94644 7.50459 7.94862 8.16504 8.37094 8.51546 9.93935 10.46090 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.074035 B = 0.006018 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.109350 B = 4651.824758 C = 4726.057389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.009 3.991 7 H 0.086 0.914 8 C 0.168 3.832 9 N -0.469 5.469 10 O 0.044 5.956 11 C 0.301 3.699 12 C -0.418 4.418 13 H 0.112 0.888 14 C 0.071 3.929 15 N -0.765 5.765 16 Si 0.935 3.065 17 H -0.255 1.255 18 H -0.269 1.269 19 H -0.269 1.269 20 N -0.616 5.616 21 C -0.108 4.108 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.291 0.709 30 H 0.075 0.925 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 5.748 -3.802 7.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.011 4.011 7 H 0.105 0.895 8 C -0.106 4.106 9 N -0.198 5.198 10 O -0.003 6.003 11 C 0.110 3.890 12 C -0.455 4.455 13 H 0.130 0.870 14 C -0.154 4.154 15 N -0.393 5.393 16 Si 0.758 3.242 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.360 5.360 21 C -0.146 4.146 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.200 5.756 -4.222 8.283 hybrid contribution 0.680 -0.594 0.620 1.096 sum -3.520 5.162 -3.602 7.212 Atomic orbital electron populations 1.21792 0.95233 1.01819 1.01109 1.21957 0.95291 0.99025 0.95292 0.90956 1.22188 0.97402 0.98521 0.97217 1.22168 0.97359 1.01151 0.94618 1.20000 0.96300 0.92221 0.92560 0.89520 1.24768 0.91285 0.94985 0.99548 1.74242 1.22847 1.03224 1.19531 1.85533 1.29223 1.35610 1.49913 1.24238 0.87255 0.85280 0.92248 1.18594 1.04754 0.96977 1.25222 0.87012 1.26193 0.96777 0.96680 0.95736 1.69644 1.25604 1.09968 1.34070 0.85804 0.80036 0.79322 0.79044 1.17862 1.19370 1.19378 1.72235 1.22070 1.18473 1.23226 1.22596 0.95215 0.99917 0.96890 0.92858 0.93044 0.92532 0.92216 0.91820 0.92019 0.91151 0.89800 0.90654 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.14 37.16 0.34 -1.32 16 2 C -0.10 -1.31 3.46 -88.97 -0.31 -1.62 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.59 6.37 -25.62 -0.16 -1.75 16 5 C -0.11 -1.97 6.36 -25.62 -0.16 -2.13 16 6 C 0.01 0.19 3.39 -90.11 -0.31 -0.12 16 7 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 8 C 0.17 4.31 6.70 -156.79 -1.05 3.26 16 9 N -0.47 -12.94 11.82 31.51 0.37 -12.57 16 10 O 0.04 1.30 9.74 15.14 0.15 1.44 16 11 C 0.30 8.76 7.82 -16.35 -0.13 8.63 16 12 C -0.42 -11.25 9.48 -37.95 -0.36 -11.61 16 13 H 0.11 2.85 7.85 -52.49 -0.41 2.44 16 14 C 0.07 1.74 5.50 -17.28 -0.10 1.64 16 15 N -0.77 -19.79 12.06 55.57 0.67 -19.12 16 16 Si 0.94 17.80 29.56 -169.99 -5.03 12.78 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 20 N -0.62 -17.37 11.61 -11.51 -0.13 -17.51 16 21 C -0.11 -1.84 5.75 -24.75 -0.14 -1.99 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.86 7.79 -51.92 -0.40 0.45 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16 29 H 0.29 6.62 8.29 -40.82 -0.34 6.29 16 30 H 0.07 1.43 7.85 -51.93 -0.41 1.03 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 264.62 15.07 3.99 3.99 Total: -1.00 -30.17 264.62 -6.49 -36.66 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.14 Total: 1.33 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.38 Total: -7.01 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.91 Total: -49.19 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.15 Total: 1.44 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.17 -6.49 -36.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235323866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.589 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds