Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.50699 * 109.47084 * 120.00492 * 2 1 3 14 14 N 1.31131 * 126.54850 * 239.71540 * 13 2 1 15 15 C 1.34494 * 105.61169 * 179.91726 * 14 13 2 16 16 C 1.50703 * 126.28774 * 180.12740 * 15 14 13 17 17 C 1.52995 * 117.49844 * 188.90582 * 16 15 14 18 18 C 1.52997 * 117.50214 * 120.28145 * 16 15 14 19 19 N 1.29944 * 107.42607 * 0.34350 * 15 14 13 20 20 O 1.21298 * 110.25491 * 359.78218 * 19 15 14 21 21 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 22 22 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 24 24 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 25 25 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.09005 * 115.54980 * 334.61338 * 16 15 14 28 28 H 1.08995 * 117.50460 * 0.02562 * 17 16 15 29 29 H 1.09004 * 117.49656 * 145.01855 * 17 16 15 30 30 H 1.08999 * 117.50218 * 214.98072 * 18 16 15 31 31 H 1.09000 * 117.49532 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0324 -0.7105 1.2304 14 7 2.7935 -0.2024 2.1695 15 6 2.9822 -1.1938 3.0585 16 6 3.7896 -1.1116 4.3283 17 6 4.0453 -2.4145 5.0885 18 6 3.0625 -1.3833 5.6467 19 7 2.3442 -2.2371 2.6190 20 8 1.7919 -1.9805 1.5700 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 1.6054 -1.7198 -1.2952 25 1 3.1264 -0.7994 -1.2056 26 1 2.9146 -1.8469 -4.7323 27 1 4.5802 -0.3611 4.3349 28 1 3.6300 -3.3312 4.6701 29 1 5.0044 -2.5215 5.5954 30 1 3.3749 -0.8119 6.5208 31 1 2.0000 -1.6211 5.5957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235411594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = 74.320267 kcal Electronic energy + Delta-G solvation = -14661.546385 eV Core-core repulsion = 12139.708471 eV Total energy + Delta-G solvation = -2521.837914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.10399 -37.65124 -35.87158 -34.60514 -32.47762 -30.64762 -27.13825 -25.10380 -24.56087 -22.99235 -22.51677 -21.44336 -19.16702 -17.56514 -17.08848 -16.56358 -15.54810 -14.87542 -14.56303 -14.27876 -13.41619 -12.64383 -12.55572 -12.08827 -11.97971 -11.85276 -11.65450 -11.38787 -10.99641 -10.92223 -10.75215 -10.65080 -10.52508 -10.46563 -10.11032 -9.76703 -9.27010 -9.12171 -8.44363 -6.08353 -4.12626 1.60510 2.53933 3.30241 3.34999 3.36120 3.39517 3.70632 3.80399 4.36352 4.42611 4.70530 4.84775 4.89247 5.27893 5.44094 5.55577 5.61594 5.73853 5.83582 5.91730 5.97561 6.01428 6.26704 6.37267 6.56356 6.67524 6.82454 7.47967 7.56139 7.86695 8.22873 8.61949 8.91480 9.51850 11.02942 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.063041 B = 0.005583 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.048522 B = 5014.405797 C = 5163.083002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 H 0.106 0.894 4 C 0.029 3.971 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.220 3.780 14 N -0.500 5.500 15 C 0.191 3.809 16 C -0.072 4.072 17 C -0.161 4.161 18 C -0.159 4.159 19 N -0.398 5.398 20 O 0.075 5.925 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.022 0.978 26 H 0.263 0.737 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 0.927 13.737 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.124 0.876 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.001 3.999 14 N -0.233 5.233 15 C -0.081 4.081 16 C -0.092 4.092 17 C -0.198 4.198 18 C -0.197 4.197 19 N -0.109 5.109 20 O 0.019 5.981 21 H 0.104 0.896 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.259 0.354 14.211 14.217 hybrid contribution -0.148 0.491 -1.080 1.195 sum -0.407 0.845 13.131 13.164 Atomic orbital electron populations 1.21779 0.93032 1.02540 1.01944 1.20361 0.96538 0.98875 0.86425 0.87621 1.19244 0.96865 0.96070 0.88724 1.21018 1.36061 1.08627 0.90322 0.91982 1.24999 0.94954 0.95011 0.99216 1.69955 1.38202 1.20925 1.23909 0.86599 0.78970 0.80016 0.82089 1.20134 1.21293 1.20076 1.29613 0.91323 0.81711 0.97241 1.71874 1.18292 1.29615 1.03484 1.24692 0.99457 0.85751 0.98207 1.19986 1.00852 1.02523 0.85836 1.23053 1.01170 0.93388 1.02222 1.23043 0.98787 1.02647 0.95271 1.74496 1.13893 1.23777 0.98742 1.85276 1.54224 1.30045 1.28530 0.89630 0.92317 0.94089 0.95259 0.95999 0.92717 0.84943 0.87826 0.87661 0.87613 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.99 37.16 0.33 -2.00 16 2 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 3 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 4 C 0.03 0.71 4.43 -27.88 -0.12 0.59 16 5 C -0.52 -13.72 8.41 -34.44 -0.29 -14.01 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.22 4.39 7.02 -13.06 -0.09 4.30 16 14 N -0.50 -9.82 11.55 -9.87 -0.11 -9.93 16 15 C 0.19 3.42 7.74 -156.37 -1.21 2.21 16 16 C -0.07 -0.96 6.33 -91.77 -0.58 -1.54 16 17 C -0.16 -1.75 10.14 -26.73 -0.27 -2.02 16 18 C -0.16 -1.68 10.23 -26.73 -0.27 -1.95 16 19 N -0.40 -7.60 11.77 30.90 0.36 -7.24 16 20 O 0.08 1.51 11.31 18.09 0.20 1.72 16 21 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.10 1.26 7.91 -51.93 -0.41 0.85 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -29.61 273.83 -6.65 -36.26 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.08 Total: -2.27 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.86 Total: -13.16 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.99 Total: -42.39 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.61 -6.65 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.575 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds