Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.50699 * 109.47084 * 120.00492 * 2 1 3 14 14 N 1.31131 * 126.54850 * 239.71540 * 13 2 1 15 15 C 1.34494 * 105.61169 * 179.91726 * 14 13 2 16 16 C 1.50703 * 126.28774 * 180.12740 * 15 14 13 17 17 C 1.52995 * 117.49844 * 188.90582 * 16 15 14 18 18 C 1.52997 * 117.50214 * 120.28145 * 16 15 14 19 19 N 1.29944 * 107.42607 * 0.34350 * 15 14 13 20 20 O 1.21298 * 110.25491 * 359.78218 * 19 15 14 21 21 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 22 22 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 24 24 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 25 25 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.09005 * 115.54980 * 334.61338 * 16 15 14 28 28 H 1.08995 * 117.50460 * 0.02562 * 17 16 15 29 29 H 1.09004 * 117.49656 * 145.01855 * 17 16 15 30 30 H 1.08999 * 117.50218 * 214.98072 * 18 16 15 31 31 H 1.09000 * 117.49532 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0324 -0.7105 1.2304 14 7 2.7935 -0.2024 2.1695 15 6 2.9822 -1.1938 3.0585 16 6 3.7896 -1.1116 4.3283 17 6 4.0453 -2.4145 5.0885 18 6 3.0625 -1.3833 5.6467 19 7 2.3442 -2.2371 2.6190 20 8 1.7919 -1.9805 1.5700 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 1.6054 -1.7198 -1.2952 25 1 3.1264 -0.7994 -1.2056 26 1 2.9146 -1.8469 -4.7323 27 1 4.5802 -0.3611 4.3349 28 1 3.6300 -3.3312 4.6701 29 1 5.0044 -2.5215 5.5954 30 1 3.3749 -0.8119 6.5208 31 1 2.0000 -1.6211 5.5957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235411594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = 55.842908 kcal Electronic energy + Delta-G solvation = -14662.347623 eV Core-core repulsion = 12139.708471 eV Total energy + Delta-G solvation = -2522.639152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.59176 -38.67437 -37.54977 -36.08718 -34.42270 -32.21928 -29.01063 -26.45195 -26.15386 -24.65461 -23.36389 -22.97461 -20.58975 -19.08735 -18.66602 -18.38089 -16.69412 -16.52225 -16.26217 -15.53462 -15.03941 -14.43000 -13.89768 -13.75530 -13.38001 -13.13336 -13.01642 -12.82519 -12.61768 -12.51010 -12.30005 -12.16689 -12.05717 -11.80853 -11.52776 -11.33490 -11.27723 -10.62588 -10.53863 -8.17756 -6.28991 0.08334 1.11949 1.47338 1.49841 1.57214 1.84134 2.42448 2.53045 2.75729 3.10674 3.17626 3.69434 3.79114 3.96333 4.12490 4.26628 4.30777 4.54009 4.66251 4.74134 4.83974 4.90772 5.02427 5.03048 5.07826 5.14288 5.35153 5.39673 5.56966 5.79284 6.15744 6.84823 7.10767 7.40567 8.94705 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.063041 B = 0.005583 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.048522 B = 5014.405797 C = 5163.083002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 H 0.113 0.887 4 C 0.037 3.963 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.214 3.786 14 N -0.511 5.511 15 C 0.196 3.804 16 C -0.104 4.104 17 C -0.150 4.150 18 C -0.138 4.138 19 N -0.412 5.412 20 O 0.055 5.945 21 H 0.086 0.914 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.004 0.996 25 H -0.014 1.014 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 2.286 14.972 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.131 0.869 4 C -0.001 4.001 5 C -0.568 4.568 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.216 1.216 12 H -0.186 1.186 13 C -0.006 4.006 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.124 4.124 17 C -0.188 4.188 18 C -0.176 4.176 19 N -0.126 5.126 20 O 0.004 5.996 21 H 0.104 0.896 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.023 0.977 25 H 0.004 0.996 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.104 0.896 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.677 1.720 15.440 15.551 hybrid contribution 0.028 0.036 -1.367 1.368 sum -0.649 1.756 14.074 14.197 Atomic orbital electron populations 1.21733 0.90725 1.02814 1.03322 1.20166 0.98363 0.98311 0.84360 0.86891 1.19035 0.94502 0.95444 0.91157 1.21473 1.35457 1.09049 0.90801 0.90239 1.25966 0.94934 0.95918 1.02850 1.70112 1.39929 1.22972 1.24594 0.85464 0.79219 0.78569 0.77593 1.19107 1.21640 1.18596 1.29573 0.91651 0.81857 0.97506 1.71885 1.18242 1.30425 1.03971 1.25544 0.98485 0.84644 0.98931 1.20360 1.01961 1.04985 0.85064 1.23164 1.02764 0.91699 1.01127 1.23176 0.98150 1.01902 0.94400 1.74493 1.15002 1.24391 0.98745 1.85255 1.54944 1.30169 1.29243 0.89560 0.92649 0.91278 0.97744 0.99555 0.92837 0.83442 0.89578 0.84524 0.84201 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 8.99 71.98 0.65 -3.65 16 2 C 0.01 0.33 2.81 -11.54 -0.03 0.30 16 3 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 4 C 0.04 1.86 4.43 29.85 0.13 1.99 16 5 C -0.53 -27.93 8.41 25.60 0.22 -27.71 16 6 H 0.08 3.83 7.06 -2.91 -0.02 3.81 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.94 -55.89 13.29 21.45 0.28 -55.60 16 9 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 C 0.21 8.61 7.02 88.38 0.62 9.23 16 14 N -0.51 -19.99 11.55 -303.19 -3.50 -23.49 16 15 C 0.20 6.93 7.74 138.46 1.07 8.00 16 16 C -0.10 -2.58 6.33 -11.54 -0.07 -2.65 16 17 C -0.15 -2.90 10.14 30.59 0.31 -2.59 16 18 C -0.14 -2.51 10.23 30.59 0.31 -2.20 16 19 N -0.41 -15.87 11.77 -60.32 -0.71 -16.58 16 20 O 0.06 2.28 11.31 74.79 0.85 3.12 16 21 H 0.09 2.88 6.95 -2.39 -0.02 2.86 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 25 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 26 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.15 3.17 8.14 -2.38 -0.02 3.15 16 28 H 0.09 2.00 7.91 -2.39 -0.02 1.98 16 29 H 0.14 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.80 273.83 3.73 -61.07 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.12 Total: 5.89 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.67 Total: -18.74 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -3.93 Total: -95.68 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -64.80 3.73 -61.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.910 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds