Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.43593 * 2 1 4 4 C 1.54890 * 110.48291 * 122.53635 * 2 1 3 5 5 C 1.54886 * 102.75126 * 156.61925 * 4 2 1 6 6 C 1.54269 * 104.19544 * 322.06034 * 5 4 2 7 7 H 1.09002 * 110.03049 * 264.32131 * 6 5 4 8 8 C 1.50702 * 110.03312 * 142.93680 * 6 5 4 9 9 N 1.30444 * 126.07467 * 301.78533 * 8 6 5 10 10 O 1.21283 * 110.68280 * 179.86537 * 9 8 6 11 11 C 1.34747 * 109.53546 * 0.39486 * 10 9 8 12 12 C 1.40335 * 126.79675 * 179.77395 * 11 10 9 13 13 H 1.08004 * 120.00237 * 179.97438 * 12 11 10 14 14 C 1.40466 * 119.99908 * 359.97438 * 12 11 10 15 15 N 1.30503 * 119.99905 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00106 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47392 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47366 * 119.99610 * 16 14 12 19 19 H 1.48501 * 109.47214 * 239.99761 * 16 14 12 20 20 N 1.33329 * 106.40864 * 359.75795 * 11 10 9 21 21 C 1.53879 * 106.59574 * 23.60569 * 6 5 4 22 22 H 1.08995 * 109.47452 * 298.91695 * 1 2 3 23 23 H 1.08998 * 109.46772 * 58.91958 * 1 2 3 24 24 H 1.09007 * 109.47350 * 178.91559 * 1 2 3 25 25 H 1.09003 * 110.75715 * 38.30890 * 4 2 1 26 26 H 1.08996 * 110.91807 * 275.01259 * 4 2 1 27 27 H 1.08994 * 110.49258 * 203.37966 * 5 4 2 28 28 H 1.09005 * 110.59664 * 80.78672 * 5 4 2 29 29 H 0.96998 * 120.00281 * 180.02562 * 15 14 12 30 30 H 1.09002 * 110.02843 * 119.29065 * 21 6 5 31 31 H 1.09003 * 110.02660 * 240.70908 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4906 -1.1971 0.7617 6 6 3.3166 -1.5416 -0.7319 7 1 3.1692 -2.6148 -0.8528 8 6 4.5286 -1.0965 -1.5090 9 7 4.9933 0.1205 -1.5767 10 8 5.9820 0.1631 -2.2779 11 6 6.2516 -1.0690 -2.7520 12 6 7.3095 -1.4304 -3.6003 13 1 7.4232 -2.4574 -3.9145 14 6 8.2207 -0.4562 -4.0407 15 7 8.0830 0.7849 -3.6615 16 14 9.6293 -0.9373 -5.1693 17 1 9.5639 -2.3942 -5.4493 18 1 9.5224 -0.1826 -6.4438 19 1 10.9218 -0.6177 -4.5117 20 7 5.3145 -1.8770 -2.2553 21 6 2.0699 -0.7805 -1.2161 22 1 -0.3634 0.4969 0.8995 23 1 -0.3633 0.5305 -0.8801 24 1 -0.3634 -1.0275 -0.0194 25 1 1.4580 -1.6582 1.4245 26 1 2.1249 -0.1381 2.1023 27 1 3.8315 -2.0705 1.3175 28 1 4.1915 -0.3711 0.8835 29 1 8.7120 1.4576 -3.9660 30 1 2.3413 -0.0885 -2.0134 31 1 1.3177 -1.4844 -1.5722 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235647542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = 20.464917 kcal Electronic energy + Delta-G solvation = -14982.988202 eV Core-core repulsion = 12458.814946 eV Total energy + Delta-G solvation = -2524.173257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.96022 -38.16727 -34.07205 -33.60968 -31.36064 -29.88687 -28.25667 -26.40658 -24.95003 -21.74957 -21.54017 -19.91376 -19.31611 -17.34214 -15.82013 -15.53088 -15.38586 -14.70981 -14.43969 -13.39431 -13.33010 -13.06943 -12.74536 -11.84526 -11.77470 -11.55851 -11.47758 -11.28474 -10.81306 -10.61013 -10.46943 -10.40658 -10.30346 -10.22308 -9.89845 -9.86647 -9.37571 -8.83195 -8.16887 -7.05531 -4.97975 2.79754 2.97621 3.05294 3.32955 3.75696 3.95072 4.84773 4.92017 4.95311 5.09145 5.26760 5.50049 5.58037 5.67076 5.74531 5.84596 5.88915 5.95102 6.06824 6.12034 6.22048 6.27236 6.35044 6.53666 6.62454 6.69379 6.87015 6.93029 7.50988 7.94962 8.16717 8.37345 8.51769 9.94033 10.46624 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.073707 B = 0.006091 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.789731 B = 4596.133846 C = 4661.225880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.009 3.991 7 H 0.084 0.916 8 C 0.167 3.833 9 N -0.468 5.468 10 O 0.043 5.957 11 C 0.301 3.699 12 C -0.418 4.418 13 H 0.112 0.888 14 C 0.071 3.929 15 N -0.765 5.765 16 Si 0.935 3.065 17 H -0.255 1.255 18 H -0.269 1.269 19 H -0.269 1.269 20 N -0.617 5.617 21 C -0.106 4.106 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.291 0.709 30 H 0.066 0.934 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -1.091 3.885 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.011 4.011 7 H 0.103 0.897 8 C -0.107 4.107 9 N -0.198 5.198 10 O -0.003 6.003 11 C 0.110 3.890 12 C -0.456 4.456 13 H 0.130 0.870 14 C -0.154 4.154 15 N -0.393 5.393 16 Si 0.758 3.242 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.360 5.360 21 C -0.145 4.145 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.999 -0.612 4.298 8.236 hybrid contribution 0.899 -0.094 -0.678 1.130 sum -6.100 -0.706 3.620 7.129 Atomic orbital electron populations 1.21798 0.95416 1.01460 1.01203 1.21950 0.94783 0.99760 0.94963 0.90659 1.22533 0.96153 0.99443 0.97266 1.22402 0.97111 1.01420 0.94286 1.19822 0.88890 0.99724 0.92674 0.89716 1.24833 0.98906 0.87673 0.99269 1.74249 1.04532 1.21704 1.19308 1.85533 1.33560 1.32291 1.48922 1.24235 0.93611 0.78922 0.92269 1.18594 1.05478 0.97394 1.24101 0.87025 1.26190 0.99189 0.94089 0.95917 1.69644 1.33420 1.02005 1.34214 0.85804 0.78958 0.80379 0.79068 1.17865 1.19375 1.19377 1.72241 1.10226 1.31020 1.22560 1.22215 0.95765 0.98637 0.97881 0.93001 0.92916 0.92782 0.91654 0.91873 0.91841 0.90913 0.89806 0.91511 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.12 37.16 0.34 -1.30 16 2 C -0.10 -1.39 3.46 -88.96 -0.31 -1.70 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.12 -1.59 6.33 -24.74 -0.16 -1.75 16 5 C -0.11 -1.95 6.35 -25.07 -0.16 -2.11 16 6 C 0.01 0.18 3.44 -90.65 -0.31 -0.13 16 7 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 8 C 0.17 4.28 6.41 -156.79 -1.00 3.28 16 9 N -0.47 -12.91 11.92 31.51 0.38 -12.53 16 10 O 0.04 1.29 9.74 15.15 0.15 1.43 16 11 C 0.30 8.76 7.81 -16.36 -0.13 8.63 16 12 C -0.42 -11.27 9.48 -37.95 -0.36 -11.63 16 13 H 0.11 2.85 7.85 -52.48 -0.41 2.44 16 14 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 15 N -0.77 -19.80 12.06 55.57 0.67 -19.13 16 16 Si 0.94 17.82 29.56 -169.99 -5.03 12.79 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 N -0.62 -17.38 11.61 -11.51 -0.13 -17.52 16 21 C -0.11 -1.83 6.02 -25.62 -0.15 -1.99 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 25 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.41 7.68 -51.93 -0.40 1.01 16 29 H 0.29 6.63 8.29 -40.82 -0.34 6.29 16 30 H 0.07 1.32 7.65 -51.93 -0.40 0.92 16 31 H 0.06 0.97 7.81 -51.93 -0.41 0.56 16 LS Contribution 264.44 15.07 3.99 3.99 Total: -1.00 -30.20 264.44 -6.44 -36.64 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.12 Total: 1.38 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.34 Total: -7.05 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.91 Total: -49.19 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.15 Total: 1.43 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.20 -6.44 -36.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235647542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.107 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds