Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46688 * 2 1 4 4 C 1.35952 * 116.99744 * 179.97438 * 3 2 1 5 5 C 1.39402 * 119.78638 * 359.97438 * 4 3 2 6 6 C 1.38554 * 120.50223 * 179.97438 * 5 4 3 7 7 N 1.40023 * 119.95921 * 180.02562 * 6 5 4 8 8 C 1.39390 * 120.07735 * 0.02562 * 6 5 4 9 9 N 1.39100 * 120.21155 * 179.97438 * 8 6 5 10 10 C 1.41351 * 119.57774 * 359.97438 * 8 6 5 11 11 C 1.41061 * 120.24737 * 180.02562 * 10 8 6 12 12 H 1.08003 * 119.99942 * 333.94723 * 11 10 8 13 13 C 1.39876 * 119.99843 * 153.93883 * 11 10 8 14 14 N 1.30906 * 120.00266 * 343.57478 * 13 11 10 15 15 Si 1.86807 * 119.99839 * 163.57773 * 13 11 10 16 16 H 1.48501 * 109.46762 * 275.00905 * 15 13 11 17 17 H 1.48502 * 109.47117 * 35.00772 * 15 13 11 18 18 H 1.48498 * 109.46983 * 155.00746 * 15 13 11 19 19 C 1.37808 * 119.79025 * 180.30130 * 4 3 2 20 20 H 1.08996 * 109.47251 * 60.00563 * 1 2 3 21 21 H 1.09008 * 109.47302 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47594 * 299.99979 * 1 2 3 23 23 H 1.09000 * 109.47076 * 239.99814 * 2 1 3 24 24 H 1.09000 * 109.47000 * 119.99871 * 2 1 3 25 25 H 1.07995 * 119.75063 * 359.97438 * 5 4 3 26 26 H 0.97002 * 119.99405 * 179.97438 * 7 6 5 27 27 H 0.96994 * 119.99886 * 359.97438 * 7 6 5 28 28 H 0.97001 * 120.00092 * 180.02562 * 9 8 6 29 29 H 0.96994 * 120.00170 * 0.03266 * 9 8 6 30 30 H 0.96994 * 119.99923 * 179.97438 * 14 13 11 31 31 H 1.07999 * 120.04668 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3540 1.5255 0.0005 5 6 4.1991 0.4168 0.0016 6 6 5.5749 0.5812 0.0016 7 7 6.4131 -0.5403 0.0022 8 6 6.1254 1.8618 0.0011 9 7 7.5062 2.0301 0.0017 10 6 5.2716 2.9883 0.0001 11 6 5.8135 4.2907 -0.0010 12 1 6.7967 4.4668 0.4098 13 6 5.0776 5.3540 -0.5342 14 7 4.0505 5.1152 -1.3100 15 14 5.5603 7.1148 -0.1393 16 1 4.9432 7.5201 1.1492 17 1 7.0384 7.2107 -0.0321 18 1 5.0832 8.0134 -1.2210 19 6 3.8761 2.8009 0.0069 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7783 -0.5778 0.0024 26 1 7.3764 -0.4258 0.0018 27 1 6.0306 -1.4317 0.0029 28 1 7.8860 2.9227 0.0017 29 1 8.0892 1.2550 0.0020 30 1 3.5400 5.8525 -1.6794 31 1 3.2157 3.6554 0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238268286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -20.333153 kcal Electronic energy + Delta-G solvation = -15012.137326 eV Core-core repulsion = 12486.194932 eV Total energy + Delta-G solvation = -2525.942394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70000 -36.99983 -34.22240 -32.50884 -32.17291 -30.64862 -28.27796 -26.12763 -24.97744 -22.68555 -20.59362 -20.07113 -17.62889 -16.65562 -16.00350 -15.35595 -15.20748 -14.67571 -14.62494 -14.19993 -13.27061 -12.75494 -12.55573 -12.36974 -11.84724 -11.78169 -11.42744 -11.15625 -11.06525 -10.83271 -10.39505 -10.25418 -9.90498 -9.52585 -9.44788 -8.94146 -8.18539 -6.83629 -6.59997 -5.49579 -4.09494 2.91703 3.15848 3.17715 3.34258 3.43029 4.04249 4.34797 4.78155 4.84980 5.41473 5.47151 5.55625 5.77339 5.86528 5.97732 6.24443 6.34275 6.43589 6.82925 7.04441 7.26838 7.30033 7.47567 7.68459 8.06992 8.08759 8.32920 8.55046 8.72567 8.86406 8.94875 9.02506 9.26784 9.33769 10.37771 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.010264 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.856334 B = 2727.321008 C = 3842.082795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.327 6.327 4 C 0.123 3.877 5 C -0.335 4.335 6 C 0.176 3.824 7 N -0.896 5.896 8 C 0.024 3.976 9 N -0.888 5.888 10 C 0.122 3.878 11 C -0.462 4.462 12 H 0.074 0.926 13 C 0.077 3.923 14 N -0.791 5.791 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.265 1.265 18 H -0.280 1.280 19 C -0.198 4.198 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.380 0.620 27 H 0.382 0.618 28 H 0.390 0.610 29 H 0.368 0.632 30 H 0.278 0.722 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -6.128 1.635 6.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.242 6.242 4 C 0.078 3.922 5 C -0.359 4.359 6 C 0.073 3.927 7 N -0.440 5.440 8 C -0.078 4.078 9 N -0.435 5.435 10 C 0.117 3.883 11 C -0.492 4.492 12 H 0.092 0.908 13 C -0.141 4.141 14 N -0.417 5.417 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.190 1.190 18 H -0.206 1.206 19 C -0.220 4.220 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.207 0.793 27 H 0.208 0.792 28 H 0.218 0.782 29 H 0.193 0.807 30 H 0.088 0.912 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.818 -5.771 1.479 6.014 hybrid contribution 0.844 0.207 0.026 0.869 sum 0.026 -5.564 1.505 5.764 Atomic orbital electron populations 1.21749 0.94362 1.01578 1.02984 1.22398 0.94277 0.84448 1.00240 1.86003 1.21484 1.26443 1.90247 1.18474 0.79771 0.94099 0.99897 1.19647 0.91667 0.95961 1.28648 1.16677 0.89223 0.85098 1.01675 1.42057 1.06745 1.05435 1.89726 1.17337 0.84098 0.91213 1.15175 1.41519 1.03204 1.08120 1.90634 1.16740 0.89852 0.90960 0.90791 1.19102 1.02719 0.91564 1.35843 0.90779 1.25807 0.94250 1.01110 0.92900 1.69892 1.15644 1.33962 1.22200 0.86396 0.79738 0.81955 0.78913 1.19414 1.18977 1.20571 1.20206 0.94762 0.92916 1.14109 0.91962 0.91528 0.92033 0.93338 0.93383 0.88954 0.79310 0.79188 0.78177 0.80687 0.91150 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 37.16 0.38 -1.69 16 2 C 0.06 1.10 5.45 37.16 0.20 1.31 16 3 O -0.33 -7.57 10.13 -19.59 -0.20 -7.77 16 4 C 0.12 3.12 6.67 -39.31 -0.26 2.86 16 5 C -0.34 -7.83 8.87 -39.03 -0.35 -8.17 16 6 C 0.18 4.02 6.76 -83.57 -0.57 3.45 16 7 N -0.90 -15.75 9.09 32.50 0.30 -15.46 16 8 C 0.02 0.59 6.81 -82.95 -0.57 0.02 16 9 N -0.89 -18.11 8.98 32.87 0.30 -17.81 16 10 C 0.12 3.32 5.57 -106.67 -0.59 2.73 16 11 C -0.46 -12.25 8.48 -37.90 -0.32 -12.57 16 12 H 0.07 1.85 6.70 -52.48 -0.35 1.50 16 13 C 0.08 1.97 5.15 -17.33 -0.09 1.88 16 14 N -0.79 -21.28 10.99 55.54 0.61 -20.67 16 15 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 C -0.20 -5.49 8.59 -38.77 -0.33 -5.82 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 21 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.83 7.65 -51.93 -0.40 0.44 16 24 H 0.05 0.81 7.64 -51.93 -0.40 0.41 16 25 H 0.09 1.92 6.26 -52.49 -0.33 1.59 16 26 H 0.38 5.88 7.00 -40.82 -0.29 5.60 16 27 H 0.38 5.84 8.84 -40.82 -0.36 5.48 16 28 H 0.39 7.85 7.05 -40.82 -0.29 7.56 16 29 H 0.37 6.28 6.99 -40.82 -0.29 5.99 16 30 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 31 H 0.12 3.59 6.24 -52.49 -0.33 3.26 16 LS Contribution 259.82 15.07 3.92 3.92 Total: -1.00 -29.94 259.82 -6.03 -35.97 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -3.42 Total: 23.74 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.49 Total: -16.00 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 1.20 Total: -53.94 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.20 Total: -7.77 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.94 -6.03 -35.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238268286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.638 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds