Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46688 * 2 1 4 4 C 1.35952 * 116.99744 * 179.97438 * 3 2 1 5 5 C 1.39402 * 119.78638 * 359.97438 * 4 3 2 6 6 C 1.38554 * 120.50223 * 179.97438 * 5 4 3 7 7 N 1.40023 * 119.95921 * 180.02562 * 6 5 4 8 8 C 1.39390 * 120.07735 * 0.02562 * 6 5 4 9 9 N 1.39100 * 120.21155 * 179.97438 * 8 6 5 10 10 C 1.41351 * 119.57774 * 359.97438 * 8 6 5 11 11 C 1.41061 * 120.24737 * 180.02562 * 10 8 6 12 12 H 1.08003 * 119.99942 * 333.94723 * 11 10 8 13 13 C 1.39876 * 119.99843 * 153.93883 * 11 10 8 14 14 N 1.30906 * 120.00266 * 343.57478 * 13 11 10 15 15 Si 1.86807 * 119.99839 * 163.57773 * 13 11 10 16 16 H 1.48501 * 109.46762 * 275.00905 * 15 13 11 17 17 H 1.48502 * 109.47117 * 35.00772 * 15 13 11 18 18 H 1.48498 * 109.46983 * 155.00746 * 15 13 11 19 19 C 1.37808 * 119.79025 * 180.30130 * 4 3 2 20 20 H 1.08996 * 109.47251 * 60.00563 * 1 2 3 21 21 H 1.09008 * 109.47302 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47594 * 299.99979 * 1 2 3 23 23 H 1.09000 * 109.47076 * 239.99814 * 2 1 3 24 24 H 1.09000 * 109.47000 * 119.99871 * 2 1 3 25 25 H 1.07995 * 119.75063 * 359.97438 * 5 4 3 26 26 H 0.97002 * 119.99405 * 179.97438 * 7 6 5 27 27 H 0.96994 * 119.99886 * 359.97438 * 7 6 5 28 28 H 0.97001 * 120.00092 * 180.02562 * 9 8 6 29 29 H 0.96994 * 120.00170 * 0.03266 * 9 8 6 30 30 H 0.96994 * 119.99923 * 179.97438 * 14 13 11 31 31 H 1.07999 * 120.04668 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3540 1.5255 0.0005 5 6 4.1991 0.4168 0.0016 6 6 5.5749 0.5812 0.0016 7 7 6.4131 -0.5403 0.0022 8 6 6.1254 1.8618 0.0011 9 7 7.5062 2.0301 0.0017 10 6 5.2716 2.9883 0.0001 11 6 5.8135 4.2907 -0.0010 12 1 6.7967 4.4668 0.4098 13 6 5.0776 5.3540 -0.5342 14 7 4.0505 5.1152 -1.3100 15 14 5.5603 7.1148 -0.1393 16 1 4.9432 7.5201 1.1492 17 1 7.0384 7.2107 -0.0321 18 1 5.0832 8.0134 -1.2210 19 6 3.8761 2.8009 0.0069 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7783 -0.5778 0.0024 26 1 7.3764 -0.4258 0.0018 27 1 6.0306 -1.4317 0.0029 28 1 7.8860 2.9227 0.0017 29 1 8.0892 1.2550 0.0020 30 1 3.5400 5.8525 -1.6794 31 1 3.2157 3.6554 0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238268286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -42.189656 kcal Electronic energy + Delta-G solvation = -15013.085095 eV Core-core repulsion = 12486.194932 eV Total energy + Delta-G solvation = -2526.890163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48606 -38.73496 -36.05076 -34.20537 -33.92260 -32.07183 -30.11185 -27.92143 -26.85570 -24.14731 -22.40848 -21.86524 -19.40858 -18.32547 -17.88474 -17.11962 -16.71305 -16.40061 -16.29561 -15.82880 -15.00043 -14.53690 -14.16809 -13.83981 -13.38332 -13.28414 -13.17473 -12.87594 -12.74783 -12.42531 -12.14252 -11.73900 -11.70336 -11.34438 -11.20037 -10.75505 -9.99084 -8.69429 -8.49066 -7.28614 -6.05392 1.10062 1.42319 1.50213 1.54728 1.59824 2.27502 2.76990 2.90271 3.32335 3.80060 3.90816 4.16762 4.29957 4.46193 4.65908 4.80337 5.00588 5.01862 5.15262 5.26825 5.33251 5.58104 5.64401 5.81507 6.09496 6.20669 6.49526 6.79341 6.98644 7.07493 7.10460 7.36894 7.49266 7.67851 8.49802 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.010264 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.856334 B = 2727.321008 C = 3842.082795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.113 3.887 5 C -0.336 4.336 6 C 0.179 3.821 7 N -0.875 5.875 8 C 0.009 3.991 9 N -0.877 5.877 10 C 0.090 3.910 11 C -0.488 4.488 12 H 0.082 0.918 13 C 0.031 3.969 14 N -0.831 5.831 15 Si 0.980 3.020 16 H -0.269 1.269 17 H -0.253 1.253 18 H -0.275 1.275 19 C -0.235 4.235 20 H 0.057 0.943 21 H 0.104 0.896 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.394 0.606 27 H 0.398 0.602 28 H 0.391 0.609 29 H 0.386 0.614 30 H 0.281 0.719 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -7.441 1.942 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.265 6.265 4 C 0.068 3.932 5 C -0.360 4.360 6 C 0.073 3.927 7 N -0.421 5.421 8 C -0.094 4.094 9 N -0.425 5.425 10 C 0.085 3.915 11 C -0.519 4.519 12 H 0.100 0.900 13 C -0.183 4.183 14 N -0.458 5.458 15 Si 0.801 3.199 16 H -0.194 1.194 17 H -0.176 1.176 18 H -0.200 1.200 19 C -0.257 4.257 20 H 0.076 0.924 21 H 0.123 0.877 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.222 0.778 27 H 0.227 0.773 28 H 0.219 0.781 29 H 0.214 0.786 30 H 0.091 0.909 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.031 -7.151 1.789 7.371 hybrid contribution 0.574 0.421 -0.067 0.714 sum 0.543 -6.730 1.722 6.968 Atomic orbital electron populations 1.21777 0.91463 1.03971 1.02771 1.22813 0.96634 0.82064 1.00903 1.85978 1.20447 1.30039 1.90052 1.18593 0.81113 0.94022 0.99505 1.19925 0.91886 0.96539 1.27606 1.16800 0.89725 0.86065 1.00104 1.41894 1.07043 1.04790 1.88372 1.17459 0.85474 0.91286 1.15197 1.41371 1.01946 1.09076 1.90059 1.17088 0.90240 0.92422 0.91800 1.19397 1.03469 0.92252 1.36771 0.90014 1.26713 0.93963 1.05419 0.92200 1.69999 1.16998 1.35341 1.23421 0.85257 0.79891 0.76241 0.78471 1.19370 1.17650 1.19967 1.20135 0.95146 0.93185 1.17247 0.92388 0.87746 0.92086 0.92792 0.92360 0.86217 0.77772 0.77345 0.78052 0.78618 0.90884 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 10.28 71.98 0.74 -2.94 16 2 C 0.05 1.73 5.45 71.98 0.39 2.12 16 3 O -0.35 -16.43 10.13 -93.01 -0.94 -17.37 16 4 C 0.11 5.86 6.67 22.45 0.15 6.01 16 5 C -0.34 -15.28 8.87 22.63 0.20 -15.08 16 6 C 0.18 7.85 6.76 38.19 0.26 8.11 16 7 N -0.88 -27.99 9.09 -51.07 -0.46 -28.46 16 8 C 0.01 0.46 6.81 39.03 0.27 0.72 16 9 N -0.88 -34.59 8.98 -49.90 -0.45 -35.04 16 10 C 0.09 5.05 5.57 -21.19 -0.12 4.93 16 11 C -0.49 -26.55 8.48 23.36 0.20 -26.35 16 12 H 0.08 4.13 6.70 -2.91 -0.02 4.11 16 13 C 0.03 1.61 5.15 85.23 0.44 2.05 16 14 N -0.83 -46.58 10.99 21.82 0.24 -46.34 16 15 Si 0.98 39.86 29.59 68.60 2.03 41.89 16 16 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 C -0.23 -13.60 8.59 22.80 0.20 -13.40 16 20 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.05 1.76 7.65 -2.39 -0.02 1.74 16 24 H 0.06 1.84 7.64 -2.39 -0.02 1.82 16 25 H 0.12 4.67 6.26 -2.91 -0.02 4.65 16 26 H 0.39 10.79 7.00 -92.71 -0.65 10.14 16 27 H 0.40 10.61 8.84 -92.71 -0.82 9.79 16 28 H 0.39 15.41 7.05 -92.71 -0.65 14.75 16 29 H 0.39 12.24 6.99 -92.71 -0.65 11.59 16 30 H 0.28 14.45 8.30 -92.71 -0.77 13.68 16 31 H 0.09 5.80 6.24 -2.91 -0.02 5.78 16 Total: -1.00 -66.83 259.82 1.57 -65.27 By element: Atomic # 1 Polarization: 55.44 SS G_CDS: -1.57 Total: 53.87 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 2.72 Total: -33.82 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -0.67 Total: -109.84 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.94 Total: -17.37 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -66.83 1.57 -65.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238268286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.075 kcal (2) G-P(sol) polarization free energy of solvation -66.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds