Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47500 * 2 1 4 4 C 1.35817 * 116.99994 * 179.97438 * 3 2 1 5 5 C 1.39428 * 119.78358 * 0.02562 * 4 3 2 6 6 C 1.36322 * 120.56201 * 179.97438 * 5 4 3 7 7 C 1.40890 * 120.09850 * 0.02562 * 6 5 4 8 8 C 1.40962 * 120.21568 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00310 * 205.65081 * 8 7 6 10 10 C 1.39854 * 120.00073 * 25.65160 * 8 7 6 11 11 N 1.30950 * 119.99779 * 15.47407 * 10 8 7 12 12 Si 1.86798 * 119.99843 * 195.47209 * 10 8 7 13 13 H 1.48491 * 109.47220 * 60.00355 * 12 10 8 14 14 H 1.48500 * 109.46859 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47167 * 299.99781 * 12 10 8 16 16 C 1.41473 * 119.56728 * 359.97438 * 7 6 5 17 17 N 1.39198 * 120.27238 * 180.02562 * 16 7 6 18 18 C 1.38921 * 119.45238 * 359.74977 * 16 7 6 19 19 N 1.40379 * 120.06004 * 180.26922 * 18 16 7 20 20 H 1.09006 * 109.46762 * 300.00074 * 1 2 3 21 21 H 1.09001 * 109.47191 * 59.99199 * 1 2 3 22 22 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47191 * 120.00801 * 2 1 3 24 24 H 1.09005 * 109.47249 * 240.00129 * 2 1 3 25 25 H 1.08003 * 119.71783 * 0.02562 * 5 4 3 26 26 H 1.07997 * 119.94837 * 180.02562 * 6 5 4 27 27 H 0.96999 * 119.99521 * 180.02562 * 11 10 8 28 28 H 0.96998 * 119.99935 * 359.97438 * 17 16 7 29 29 H 0.97000 * 119.99635 * 180.02562 * 17 16 7 30 30 H 0.97001 * 120.00334 * 180.23758 * 19 18 16 31 31 H 0.97000 * 120.00100 * 0.23762 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3528 1.5251 0.0005 5 6 4.1979 0.4161 0.0005 6 6 5.5517 0.5763 0.0005 7 6 6.1102 1.8698 0.0011 8 6 7.5097 2.0382 0.0006 9 1 7.9453 2.9396 0.4058 10 6 8.3342 1.0382 -0.5247 11 7 7.8234 0.0982 -1.2799 12 14 10.1640 1.0434 -0.1492 13 1 10.3685 0.9428 1.3181 14 1 10.8103 -0.1131 -0.8200 15 1 10.7680 2.3050 -0.6479 16 6 5.2572 2.9984 0.0011 17 7 5.7931 4.2831 0.0012 18 6 3.8803 2.8140 -0.0047 19 7 3.0221 3.9249 -0.0105 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5140 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.7764 -0.5782 -0.0003 26 1 6.1970 -0.2897 0.0001 27 1 8.3952 -0.5957 -1.6439 28 1 6.7552 4.4072 0.0015 29 1 5.2046 5.0541 0.0015 30 1 2.0608 3.7952 -0.0111 31 1 3.3903 4.8223 -0.0139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238279786.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -38.534017 kcal Electronic energy + Delta-G solvation = -15036.618272 eV Core-core repulsion = 12509.886629 eV Total energy + Delta-G solvation = -2526.731642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56247 -38.53943 -35.96207 -34.38525 -33.89044 -32.07848 -30.03158 -28.28734 -26.42820 -24.27681 -22.56768 -21.52903 -19.05299 -18.72094 -18.32058 -16.92937 -16.68757 -16.45215 -15.97438 -15.78612 -14.97394 -14.67764 -14.25993 -13.79856 -13.56888 -13.26779 -13.07086 -12.76797 -12.70776 -12.48639 -12.14601 -11.58916 -11.55872 -11.32921 -11.12329 -10.68090 -10.53051 -8.53646 -8.32787 -7.40655 -5.93439 1.12679 1.39611 1.44060 1.53776 1.61222 2.30527 2.67851 2.91458 3.41671 3.74312 3.90729 4.18294 4.31495 4.50050 4.60239 4.81114 4.96224 5.04509 5.21015 5.23830 5.32767 5.42810 5.63130 6.00858 6.15716 6.21928 6.49571 6.75995 7.03651 7.06977 7.13205 7.37887 7.44321 7.60480 8.56311 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.008255 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.514852 B = 3391.064498 C = 4068.232833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 O -0.335 6.335 4 C -0.020 4.020 5 C -0.197 4.197 6 C -0.164 4.164 7 C 0.032 3.968 8 C -0.489 4.489 9 H 0.075 0.925 10 C 0.029 3.971 11 N -0.843 5.843 12 Si 0.977 3.023 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.260 1.260 16 C 0.071 3.929 17 N -0.871 5.871 18 C 0.123 3.877 19 N -0.877 5.877 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.279 0.721 28 H 0.395 0.605 29 H 0.388 0.612 30 H 0.397 0.603 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 2.358 1.944 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 O -0.252 6.252 4 C -0.068 4.068 5 C -0.217 4.217 6 C -0.186 4.186 7 C 0.027 3.973 8 C -0.520 4.520 9 H 0.093 0.907 10 C -0.182 4.182 11 N -0.472 5.472 12 Si 0.800 3.200 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.185 1.185 16 C -0.034 4.034 17 N -0.417 5.417 18 C 0.019 3.981 19 N -0.425 5.425 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.115 0.885 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.224 0.776 29 H 0.216 0.784 30 H 0.225 0.775 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.172 2.142 1.800 7.698 hybrid contribution 0.960 0.017 -0.062 0.963 sum -6.211 2.158 1.738 6.801 Atomic orbital electron populations 1.21734 0.90950 1.03793 1.03061 1.22715 0.96713 0.82424 1.00303 1.85694 1.18979 1.29082 1.91399 1.17913 0.81888 0.92115 1.14895 1.20410 0.94224 0.96287 1.10825 1.20526 0.93150 0.97292 1.07647 1.17346 0.93472 0.90185 0.96344 1.19262 0.91311 1.04168 1.37294 0.90670 1.26577 1.05070 0.94170 0.92380 1.69966 1.39186 1.12856 1.25181 0.85330 0.76970 0.78597 0.79148 1.19019 1.20149 1.18483 1.17287 0.89182 0.87049 1.09892 1.41484 1.08782 1.02618 1.88819 1.16347 0.88212 0.85927 1.07641 1.41718 1.07002 1.04306 1.89425 0.91633 0.91835 0.88548 0.93318 0.93715 0.87527 0.88114 0.91099 0.77573 0.78358 0.77469 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.05 1.73 5.45 71.98 0.39 2.13 16 3 O -0.34 -13.42 9.35 -91.50 -0.86 -14.27 16 4 C -0.02 -0.95 6.72 22.80 0.15 -0.80 16 5 C -0.20 -9.74 8.95 22.11 0.20 -9.54 16 6 C -0.16 -9.06 8.61 22.47 0.19 -8.87 16 7 C 0.03 1.76 5.58 -21.17 -0.12 1.64 16 8 C -0.49 -26.26 8.50 23.33 0.20 -26.07 16 9 H 0.08 3.78 6.68 -2.91 -0.02 3.76 16 10 C 0.03 1.52 5.18 85.22 0.44 1.97 16 11 N -0.84 -46.03 10.88 21.82 0.24 -45.80 16 12 Si 0.98 39.53 29.59 68.60 2.03 41.56 16 13 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 14 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 16 C 0.07 3.44 6.80 38.93 0.26 3.71 16 17 N -0.87 -34.31 8.98 -50.05 -0.45 -34.76 16 18 C 0.12 5.61 6.79 38.18 0.26 5.86 16 19 N -0.88 -30.99 9.09 -50.70 -0.46 -31.45 16 20 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.55 7.64 -2.39 -0.02 1.54 16 24 H 0.04 1.47 7.65 -2.38 -0.02 1.45 16 25 H 0.11 4.77 6.25 -2.91 -0.02 4.76 16 26 H 0.10 5.84 6.14 -2.91 -0.02 5.83 16 27 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 28 H 0.40 15.41 7.06 -92.71 -0.65 14.75 16 29 H 0.39 12.43 7.00 -92.71 -0.65 11.78 16 30 H 0.40 12.94 8.18 -92.71 -0.76 12.18 16 31 H 0.39 11.68 7.01 -92.71 -0.65 11.03 16 Total: -1.00 -63.38 258.40 1.71 -61.67 By element: Atomic # 1 Polarization: 56.93 SS G_CDS: -1.51 Total: 55.42 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 2.72 Total: -32.37 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -0.67 Total: -112.01 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.86 Total: -14.27 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -63.38 1.71 -61.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238279786.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.133 kcal (2) G-P(sol) polarization free energy of solvation -63.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds