Wall clock time and date at job start Mon Mar 30 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46691 * 2 1 4 4 C 1.35800 * 117.00001 * 180.02562 * 3 2 1 5 5 C 1.38061 * 120.09620 * 359.97438 * 4 3 2 6 6 C 1.38661 * 120.42983 * 180.02562 * 5 4 3 7 7 C 1.38818 * 120.62836 * 359.97438 * 6 5 4 8 8 N 1.40318 * 119.90781 * 179.72603 * 7 6 5 9 9 C 1.39014 * 120.17866 * 359.97438 * 7 6 5 10 10 N 1.39246 * 120.21138 * 179.97438 * 9 7 6 11 11 C 1.41334 * 119.56841 * 0.02562 * 9 7 6 12 12 C 1.40929 * 120.30519 * 179.97438 * 11 9 7 13 13 H 1.08006 * 119.99979 * 321.16790 * 12 11 9 14 14 C 1.39902 * 120.00095 * 141.16457 * 12 11 9 15 15 N 1.30931 * 119.99680 * 339.59978 * 14 12 11 16 16 Si 1.86795 * 119.99790 * 159.60174 * 14 12 11 17 17 H 1.48499 * 109.47322 * 90.00163 * 16 14 12 18 18 H 1.48506 * 109.47034 * 210.00012 * 16 14 12 19 19 H 1.48499 * 109.47594 * 329.99817 * 16 14 12 20 20 H 1.08992 * 109.47684 * 299.99962 * 1 2 3 21 21 H 1.09001 * 109.47036 * 60.00608 * 1 2 3 22 22 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47385 * 240.00305 * 2 1 3 24 24 H 1.08993 * 109.47534 * 119.99785 * 2 1 3 25 25 H 1.07995 * 119.78811 * 0.02562 * 5 4 3 26 26 H 1.08005 * 119.68395 * 179.97438 * 6 5 4 27 27 H 0.96998 * 120.00058 * 359.97438 * 8 7 6 28 28 H 0.97001 * 119.99987 * 180.02562 * 8 7 6 29 29 H 0.97003 * 120.00428 * 359.97438 * 10 9 7 30 30 H 0.97004 * 119.99497 * 180.02562 * 10 9 7 31 31 H 0.97003 * 119.99823 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3525 1.5253 -0.0005 5 6 4.1954 0.4319 -0.0005 6 6 5.5711 0.6057 -0.0005 7 6 6.1231 1.8794 -0.0011 8 7 7.5173 2.0378 0.0047 9 6 5.2983 2.9985 -0.0022 10 7 5.8512 4.2764 -0.0022 11 6 3.8949 2.8305 -0.0022 12 6 3.0443 3.9541 -0.0027 13 1 3.2992 4.8248 0.5834 14 6 1.8696 3.9418 -0.7626 15 7 1.7432 3.1017 -1.7588 16 14 0.4818 5.1240 -0.3557 17 1 0.6665 6.3853 -1.1175 18 1 -0.8178 4.5080 -0.7259 19 1 0.4930 5.4187 1.0997 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.7807 -0.5652 -0.0005 26 1 6.2193 -0.2582 -0.0001 27 1 8.0939 1.2579 0.0095 28 1 7.9044 2.9272 0.0047 29 1 6.8148 4.3881 -0.0011 30 1 5.2727 5.0551 -0.0026 31 1 0.9289 3.0934 -2.2859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238286102.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:07 Heat of formation + Delta-G solvation = -10.826336 kcal Electronic energy + Delta-G solvation = -15451.789746 eV Core-core repulsion = 12926.259599 eV Total energy + Delta-G solvation = -2525.530147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.54315 -36.71964 -33.74591 -32.64353 -32.01989 -30.47932 -28.40299 -25.92032 -24.71489 -22.58369 -20.75265 -19.67634 -17.26021 -16.65763 -16.45821 -15.12059 -14.81558 -14.58425 -14.41261 -13.83005 -13.52903 -12.59490 -12.34728 -12.14404 -11.60192 -11.55113 -11.40236 -11.16513 -10.89234 -10.75149 -10.38818 -10.22510 -9.87705 -9.35442 -9.22552 -8.71890 -8.28555 -6.60583 -6.31380 -5.52861 -3.91844 2.99851 3.26481 3.28270 3.33635 3.41030 4.23609 4.68680 4.87134 5.00645 5.47831 5.67532 5.82452 5.86015 6.05102 6.24060 6.32430 6.54306 6.58198 6.65911 7.02815 7.09026 7.44510 7.55275 7.62162 7.85976 8.13000 8.38054 8.61080 8.74262 8.86852 9.09258 9.11764 9.30409 9.47943 10.61858 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.013327 C = 0.008965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.678855 B = 2100.484289 C = 3122.358767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 O -0.276 6.276 4 C 0.073 3.927 5 C -0.203 4.203 6 C -0.220 4.220 7 C 0.123 3.877 8 N -0.900 5.900 9 C 0.084 3.916 10 N -0.882 5.882 11 C 0.079 3.921 12 C -0.478 4.478 13 H 0.069 0.931 14 C 0.095 3.905 15 N -0.778 5.778 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.266 1.266 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.382 0.618 28 H 0.378 0.622 29 H 0.371 0.629 30 H 0.393 0.607 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -2.330 1.954 3.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.026 3.974 5 C -0.225 4.225 6 C -0.244 4.244 7 C 0.021 3.979 8 N -0.445 5.445 9 C -0.019 4.019 10 N -0.428 5.428 11 C 0.073 3.927 12 C -0.509 4.509 13 H 0.087 0.913 14 C -0.123 4.123 15 N -0.404 5.404 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.190 1.190 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.208 0.792 28 H 0.205 0.795 29 H 0.197 0.803 30 H 0.222 0.778 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.349 -2.369 1.759 3.245 hybrid contribution -0.088 0.479 0.004 0.487 sum 1.261 -1.891 1.763 2.877 Atomic orbital electron populations 1.21670 0.94838 1.00861 1.02820 1.22338 0.94305 0.85987 0.99189 1.86209 1.20001 1.23589 1.89049 1.18739 0.81104 0.92978 1.04616 1.20300 0.93522 0.96122 1.12506 1.19386 0.93801 0.93271 1.17935 1.16974 0.82341 0.92691 1.05873 1.42060 1.03731 1.08148 1.90557 1.17077 0.91149 0.83579 1.10114 1.41632 1.06658 1.04986 1.89476 1.16182 0.88530 0.90840 0.97179 1.18694 1.04904 1.00903 1.26368 0.91323 1.25455 0.98229 0.95236 0.93338 1.69783 1.26141 1.31941 1.12499 0.86612 0.81282 0.80569 0.79782 1.20423 1.20595 1.19037 0.92427 0.92021 0.92119 0.93944 0.94417 0.88958 0.89383 0.79211 0.79515 0.80349 0.77817 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 10.28 37.16 0.38 -2.08 16 2 C 0.06 1.19 5.46 37.16 0.20 1.40 16 3 O -0.28 -7.01 7.03 -19.11 -0.13 -7.14 16 4 C 0.07 1.93 6.17 -38.47 -0.24 1.69 16 5 C -0.20 -4.90 9.02 -39.49 -0.36 -5.26 16 6 C -0.22 -5.04 9.87 -39.21 -0.39 -5.43 16 7 C 0.12 2.77 6.77 -83.47 -0.56 2.20 16 8 N -0.90 -15.75 9.10 32.54 0.30 -15.45 16 9 C 0.08 2.05 6.80 -83.03 -0.56 1.49 16 10 N -0.88 -18.02 8.98 32.83 0.29 -17.73 16 11 C 0.08 2.14 5.38 -106.52 -0.57 1.57 16 12 C -0.48 -12.94 8.01 -37.94 -0.30 -13.25 16 13 H 0.07 1.79 7.24 -52.48 -0.38 1.41 16 14 C 0.10 2.52 4.39 -17.31 -0.08 2.44 16 15 N -0.78 -21.18 11.26 55.55 0.63 -20.55 16 16 Si 0.89 19.99 29.61 -169.99 -5.03 14.95 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 23 H 0.04 0.85 7.66 -51.93 -0.40 0.46 16 24 H 0.04 0.71 7.66 -51.93 -0.40 0.32 16 25 H 0.09 2.01 6.26 -52.49 -0.33 1.68 16 26 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 27 H 0.38 5.79 8.84 -40.82 -0.36 5.43 16 28 H 0.38 5.85 6.99 -40.82 -0.29 5.56 16 29 H 0.37 6.30 6.98 -40.82 -0.28 6.02 16 30 H 0.39 8.01 7.32 -40.82 -0.30 7.72 16 31 H 0.27 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 259.18 15.07 3.91 3.91 Total: -1.00 -30.12 259.18 -6.08 -36.20 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -3.56 Total: 21.04 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.48 Total: -15.23 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 1.22 Total: -53.73 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.13 Total: -7.14 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.12 -6.08 -36.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238286102.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.374 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds