Wall clock time and date at job start Mon Mar 30 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46691 * 2 1 4 4 C 1.35800 * 117.00001 * 180.02562 * 3 2 1 5 5 C 1.38061 * 120.09620 * 359.97438 * 4 3 2 6 6 C 1.38661 * 120.42983 * 180.02562 * 5 4 3 7 7 C 1.38818 * 120.62836 * 359.97438 * 6 5 4 8 8 N 1.40318 * 119.90781 * 179.72603 * 7 6 5 9 9 C 1.39014 * 120.17866 * 359.97438 * 7 6 5 10 10 N 1.39246 * 120.21138 * 179.97438 * 9 7 6 11 11 C 1.41334 * 119.56841 * 0.02562 * 9 7 6 12 12 C 1.40929 * 120.30519 * 179.97438 * 11 9 7 13 13 H 1.08006 * 119.99979 * 321.16790 * 12 11 9 14 14 C 1.39902 * 120.00095 * 141.16457 * 12 11 9 15 15 N 1.30931 * 119.99680 * 339.59978 * 14 12 11 16 16 Si 1.86795 * 119.99790 * 159.60174 * 14 12 11 17 17 H 1.48499 * 109.47322 * 90.00163 * 16 14 12 18 18 H 1.48506 * 109.47034 * 210.00012 * 16 14 12 19 19 H 1.48499 * 109.47594 * 329.99817 * 16 14 12 20 20 H 1.08992 * 109.47684 * 299.99962 * 1 2 3 21 21 H 1.09001 * 109.47036 * 60.00608 * 1 2 3 22 22 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47385 * 240.00305 * 2 1 3 24 24 H 1.08993 * 109.47534 * 119.99785 * 2 1 3 25 25 H 1.07995 * 119.78811 * 0.02562 * 5 4 3 26 26 H 1.08005 * 119.68395 * 179.97438 * 6 5 4 27 27 H 0.96998 * 120.00058 * 359.97438 * 8 7 6 28 28 H 0.97001 * 119.99987 * 180.02562 * 8 7 6 29 29 H 0.97003 * 120.00428 * 359.97438 * 10 9 7 30 30 H 0.97004 * 119.99497 * 180.02562 * 10 9 7 31 31 H 0.97003 * 119.99823 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3525 1.5253 -0.0005 5 6 4.1954 0.4319 -0.0005 6 6 5.5711 0.6057 -0.0005 7 6 6.1231 1.8794 -0.0011 8 7 7.5173 2.0378 0.0047 9 6 5.2983 2.9985 -0.0022 10 7 5.8512 4.2764 -0.0022 11 6 3.8949 2.8305 -0.0022 12 6 3.0443 3.9541 -0.0027 13 1 3.2992 4.8248 0.5834 14 6 1.8696 3.9418 -0.7626 15 7 1.7432 3.1017 -1.7588 16 14 0.4818 5.1240 -0.3557 17 1 0.6665 6.3853 -1.1175 18 1 -0.8178 4.5080 -0.7259 19 1 0.4930 5.4187 1.0997 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.7807 -0.5652 -0.0005 26 1 6.2193 -0.2582 -0.0001 27 1 8.0939 1.2579 0.0095 28 1 7.9044 2.9272 0.0047 29 1 6.8148 4.3881 -0.0011 30 1 5.2727 5.0551 -0.0026 31 1 0.9289 3.0934 -2.2859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238286102.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:07 Heat of formation + Delta-G solvation = -32.158252 kcal Electronic energy + Delta-G solvation = -15452.714767 eV Core-core repulsion = 12926.259599 eV Total energy + Delta-G solvation = -2526.455169 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33857 -38.46210 -35.56305 -34.37729 -33.75962 -32.02360 -30.22497 -27.66921 -26.60887 -24.15644 -22.59250 -21.42498 -19.11254 -18.38107 -18.17814 -16.92736 -16.46609 -16.24472 -16.12585 -15.52684 -15.27548 -14.40130 -14.09809 -13.66694 -13.19822 -13.17557 -13.14274 -12.93011 -12.65820 -12.47191 -12.19000 -11.96161 -11.52705 -11.05417 -11.04173 -10.60466 -10.00453 -8.51127 -8.20062 -7.23223 -5.88999 1.15964 1.44053 1.47878 1.54877 1.59403 2.39209 3.01802 3.10407 3.39657 3.82259 3.88790 4.23076 4.38546 4.51740 4.59382 4.82064 4.85016 5.07084 5.20894 5.29622 5.35202 5.52169 5.76223 5.82657 6.10455 6.24861 6.59272 6.81816 6.98346 7.22551 7.33347 7.42353 7.63514 7.65833 8.71883 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.013327 C = 0.008965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.678855 B = 2100.484289 C = 3122.358767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 O -0.301 6.301 4 C 0.050 3.950 5 C -0.217 4.217 6 C -0.220 4.220 7 C 0.118 3.882 8 N -0.882 5.882 9 C 0.074 3.926 10 N -0.872 5.872 11 C 0.034 3.966 12 C -0.504 4.504 13 H 0.065 0.935 14 C 0.058 3.942 15 N -0.812 5.812 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.099 0.901 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.397 0.603 28 H 0.390 0.610 29 H 0.388 0.612 30 H 0.393 0.607 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 -2.812 2.296 4.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 O -0.214 6.214 4 C 0.003 3.997 5 C -0.238 4.238 6 C -0.244 4.244 7 C 0.014 3.986 8 N -0.429 5.429 9 C -0.031 4.031 10 N -0.418 5.418 11 C 0.028 3.972 12 C -0.536 4.536 13 H 0.083 0.917 14 C -0.157 4.157 15 N -0.439 5.439 16 Si 0.778 3.222 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.193 1.193 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.118 0.882 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.226 0.774 28 H 0.219 0.781 29 H 0.217 0.783 30 H 0.221 0.779 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.043 -2.840 2.105 4.083 hybrid contribution -0.119 0.525 -0.072 0.543 sum 1.924 -2.314 2.033 3.632 Atomic orbital electron populations 1.21672 0.92463 1.03193 1.02034 1.22637 0.96252 0.84249 0.99532 1.86161 1.19799 1.26355 1.89109 1.19042 0.81930 0.93546 1.05217 1.20573 0.94124 0.96466 1.12633 1.19799 0.93840 0.94491 1.16243 1.17097 0.84363 0.92137 1.04961 1.41899 1.01853 1.09690 1.89494 1.17341 0.90931 0.85369 1.09435 1.41539 1.07668 1.03834 1.88736 1.16627 0.89991 0.91493 0.99136 1.18846 1.06308 1.01196 1.27238 0.91721 1.26090 0.99975 0.96699 0.92886 1.69853 1.26668 1.33877 1.13503 0.85660 0.78511 0.78872 0.79205 1.19448 1.20253 1.19321 0.92532 0.93408 0.88190 0.94224 0.93195 0.87256 0.86566 0.77430 0.78147 0.78333 0.77870 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 10.28 71.98 0.74 -3.76 16 2 C 0.05 1.99 5.46 71.98 0.39 2.39 16 3 O -0.30 -15.53 7.03 -91.31 -0.64 -16.17 16 4 C 0.05 2.67 6.17 22.99 0.14 2.81 16 5 C -0.22 -10.31 9.02 22.33 0.20 -10.11 16 6 C -0.22 -9.64 9.87 22.51 0.22 -9.42 16 7 C 0.12 5.10 6.77 38.11 0.26 5.36 16 8 N -0.88 -28.25 9.10 -50.96 -0.46 -28.71 16 9 C 0.07 3.57 6.80 38.91 0.26 3.83 16 10 N -0.87 -34.84 8.98 -50.06 -0.45 -35.29 16 11 C 0.03 1.86 5.38 -21.09 -0.11 1.75 16 12 C -0.50 -27.91 8.01 23.33 0.19 -27.73 16 13 H 0.06 3.46 7.24 -2.91 -0.02 3.44 16 14 C 0.06 3.11 4.39 85.23 0.37 3.49 16 15 N -0.81 -45.17 11.26 21.83 0.25 -44.93 16 16 Si 0.95 41.69 29.61 68.60 2.03 43.72 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 23 H 0.04 1.58 7.66 -2.39 -0.02 1.57 16 24 H 0.05 1.85 7.66 -2.39 -0.02 1.83 16 25 H 0.11 4.65 6.26 -2.91 -0.02 4.64 16 26 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 27 H 0.40 10.62 8.84 -92.71 -0.82 9.80 16 28 H 0.39 10.85 6.99 -92.71 -0.65 10.21 16 29 H 0.39 12.46 6.98 -92.71 -0.65 11.82 16 30 H 0.39 15.94 7.32 -92.71 -0.68 15.27 16 31 H 0.27 14.15 8.30 -92.71 -0.77 13.38 16 Total: -1.00 -65.00 259.18 1.79 -63.21 By element: Atomic # 1 Polarization: 51.16 SS G_CDS: -1.60 Total: 49.56 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 2.67 Total: -31.39 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -0.67 Total: -108.93 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.64 Total: -16.17 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -65.00 1.79 -63.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238286102.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.052 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds