Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36005 * 117.00213 * 2 1 4 4 C 1.38726 * 119.97781 * 359.97438 * 3 2 1 5 5 C 1.38083 * 120.01719 * 180.02562 * 4 3 2 6 6 C 1.38890 * 119.98113 * 359.97402 * 5 4 3 7 7 N 1.39940 * 120.01406 * 179.97438 * 6 5 4 8 8 C 1.38833 * 119.96201 * 0.02562 * 6 5 4 9 9 C 1.50703 * 120.01100 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47145 * 40.00338 * 9 8 6 11 11 N 1.46900 * 109.47047 * 160.00562 * 9 8 6 12 12 C 1.50700 * 109.47148 * 280.00317 * 9 8 6 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 C 1.38140 * 119.97990 * 0.27975 * 8 6 5 21 21 H 1.09002 * 109.46765 * 300.00770 * 1 2 3 22 22 H 1.08997 * 109.46728 * 60.00271 * 1 2 3 23 23 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99200 * 0.02562 * 4 3 2 25 25 H 1.08004 * 120.01202 * 179.97438 * 5 4 3 26 26 H 0.97000 * 119.99100 * 180.02562 * 7 6 5 27 27 H 0.96993 * 120.00617 * 0.02562 * 7 6 5 28 28 H 1.00907 * 110.99867 * 296.04432 * 11 9 8 29 29 H 1.00896 * 111.00376 * 59.99771 * 11 9 8 30 30 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 31 31 H 1.07999 * 119.98480 * 179.70199 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2906 2.3750 -0.0005 5 6 1.9166 3.6057 -0.0011 6 6 3.3036 3.6789 -0.0005 7 7 3.9388 4.9258 -0.0016 8 6 4.0594 2.5142 0.0000 9 6 5.5644 2.5923 0.0012 10 1 5.8859 3.3972 0.6621 11 7 6.1204 1.3179 0.4751 12 6 6.0543 2.8648 -1.3976 13 1 5.3466 2.9713 -2.2065 14 6 7.4059 2.9793 -1.6446 15 7 8.2676 2.8501 -0.6595 16 14 8.0133 3.3179 -3.3784 17 1 9.4962 3.3959 -3.3770 18 1 7.5756 2.2213 -4.2791 19 1 7.4508 4.6061 -3.8572 20 6 3.4314 1.2838 -0.0058 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2121 2.3179 -0.0005 25 1 1.3280 4.5113 -0.0019 26 1 4.9075 4.9765 -0.0016 27 1 3.4106 5.7392 -0.0024 28 1 5.8589 1.1436 1.4340 29 1 5.8365 0.5553 -0.1214 30 1 7.9522 2.6747 0.2409 31 1 4.0192 0.3779 -0.0103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238363447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -13.182741 kcal Electronic energy + Delta-G solvation = -15119.713468 eV Core-core repulsion = 12594.081140 eV Total energy + Delta-G solvation = -2525.632329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67876 -37.69270 -34.64775 -33.22783 -31.52274 -29.47345 -27.98659 -26.36310 -25.61276 -22.89135 -21.32409 -20.05038 -17.46835 -16.70458 -16.58272 -16.15814 -15.35929 -14.74703 -14.50883 -13.92011 -13.56954 -13.20770 -13.01157 -12.64719 -12.34381 -11.97056 -11.58961 -11.43408 -11.14083 -10.74167 -10.42738 -10.15596 -9.96810 -9.36181 -8.90165 -8.34597 -7.99985 -7.47213 -6.54927 -6.14629 -4.00130 1.95624 2.24676 3.48115 3.50743 3.68751 3.71936 4.41957 4.61375 4.65970 5.17671 5.28973 5.35105 5.40056 5.45996 5.56223 5.87743 5.99158 6.10213 6.27811 6.54749 6.60605 6.86118 6.91515 7.17804 7.35957 7.86395 7.98812 8.20786 8.35370 8.50851 8.69607 8.80047 9.07188 9.83031 11.22520 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.008223 C = 0.007705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.817493 B = 3404.224478 C = 3633.279738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.061 3.939 4 C -0.180 4.180 5 C -0.175 4.175 6 C 0.194 3.806 7 N -0.873 5.873 8 C -0.105 4.105 9 C 0.246 3.754 10 H 0.036 0.964 11 N -0.831 5.831 12 C -0.604 4.604 13 H 0.046 0.954 14 C 0.038 3.962 15 N -0.891 5.891 16 Si 1.063 2.937 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.291 1.291 20 C -0.115 4.115 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.408 0.592 27 H 0.386 0.614 28 H 0.303 0.697 29 H 0.328 0.672 30 H 0.289 0.711 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.977 -0.137 2.110 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.240 6.240 3 C 0.015 3.985 4 C -0.200 4.200 5 C -0.199 4.199 6 C 0.089 3.911 7 N -0.414 5.414 8 C -0.112 4.112 9 C 0.137 3.863 10 H 0.053 0.947 11 N -0.359 5.359 12 C -0.643 4.643 13 H 0.064 0.936 14 C -0.172 4.172 15 N -0.525 5.525 16 Si 0.892 3.108 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.218 1.218 20 C -0.135 4.135 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.133 0.867 25 H 0.130 0.870 26 H 0.239 0.761 27 H 0.212 0.788 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.774 0.184 1.092 10.831 hybrid contribution -2.738 -0.069 0.875 2.876 sum -13.513 0.116 1.967 13.656 Atomic orbital electron populations 1.22864 0.79870 1.02824 1.00679 1.86028 1.20113 1.27615 1.90235 1.18693 0.92108 0.83561 1.04093 1.20681 0.98630 0.91993 1.08648 1.20230 0.92521 0.96955 1.10151 1.17565 0.90794 0.86572 0.96210 1.42498 1.10025 1.03617 1.85250 1.20855 0.99853 0.90247 1.00200 1.18154 0.82110 0.88981 0.97055 0.94671 1.59416 1.66817 1.05643 1.04011 1.21669 0.94235 1.56143 0.92248 0.93600 1.25603 0.93069 0.93668 1.04835 1.70563 1.37570 1.41377 1.02984 0.83656 0.76047 0.76229 0.74860 1.20964 1.21679 1.21791 1.20008 0.90708 0.97985 1.04750 0.93424 0.93348 0.89125 0.86679 0.86995 0.76058 0.78815 0.88664 0.85808 0.89795 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.33 -5.51 10.50 -19.76 -0.21 -5.72 16 3 C 0.06 1.13 6.69 -39.24 -0.26 0.87 16 4 C -0.18 -3.04 9.03 -39.46 -0.36 -3.40 16 5 C -0.18 -3.04 9.89 -39.40 -0.39 -3.43 16 6 C 0.19 3.81 6.73 -83.69 -0.56 3.25 16 7 N -0.87 -15.42 9.01 32.45 0.29 -15.13 16 8 C -0.11 -2.28 5.03 -104.44 -0.53 -2.81 16 9 C 0.25 5.96 1.83 -70.01 -0.13 5.83 16 10 H 0.04 0.91 6.96 -51.93 -0.36 0.55 16 11 N -0.83 -19.18 7.28 -6.65 -0.05 -19.23 16 12 C -0.60 -16.45 8.46 -34.44 -0.29 -16.74 16 13 H 0.05 1.30 7.74 -52.49 -0.41 0.90 16 14 C 0.04 1.07 5.39 -17.82 -0.10 0.97 16 15 N -0.89 -26.38 13.51 55.43 0.75 -25.63 16 16 Si 1.06 25.19 29.90 -169.99 -5.08 20.10 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.11 -2.36 9.18 -39.46 -0.36 -2.72 16 21 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.12 1.59 6.29 -52.49 -0.33 1.26 16 25 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 26 H 0.41 7.92 6.86 -40.82 -0.28 7.64 16 27 H 0.39 5.46 8.84 -40.82 -0.36 5.09 16 28 H 0.30 6.24 9.06 -39.29 -0.36 5.89 16 29 H 0.33 7.47 7.28 -39.29 -0.29 7.19 16 30 H 0.29 8.57 6.39 -40.82 -0.26 8.31 16 31 H 0.12 2.46 6.25 -52.49 -0.33 2.13 16 LS Contribution 260.73 15.07 3.93 3.93 Total: -1.00 -30.82 260.73 -5.76 -36.58 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -3.41 Total: 21.90 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.98 Total: -16.80 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.99 Total: -59.99 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.21 Total: -5.72 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.82 -5.76 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238363447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.395 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds