Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36005 * 117.00213 * 2 1 4 4 C 1.38726 * 119.97781 * 359.97438 * 3 2 1 5 5 C 1.38083 * 120.01719 * 180.02562 * 4 3 2 6 6 C 1.38890 * 119.98113 * 359.97402 * 5 4 3 7 7 N 1.39940 * 120.01406 * 179.97438 * 6 5 4 8 8 C 1.38833 * 119.96201 * 0.02562 * 6 5 4 9 9 C 1.50703 * 120.01100 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47145 * 40.00338 * 9 8 6 11 11 N 1.46900 * 109.47047 * 160.00562 * 9 8 6 12 12 C 1.50700 * 109.47148 * 280.00317 * 9 8 6 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 C 1.38140 * 119.97990 * 0.27975 * 8 6 5 21 21 H 1.09002 * 109.46765 * 300.00770 * 1 2 3 22 22 H 1.08997 * 109.46728 * 60.00271 * 1 2 3 23 23 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99200 * 0.02562 * 4 3 2 25 25 H 1.08004 * 120.01202 * 179.97438 * 5 4 3 26 26 H 0.97000 * 119.99100 * 180.02562 * 7 6 5 27 27 H 0.96993 * 120.00617 * 0.02562 * 7 6 5 28 28 H 1.00907 * 110.99867 * 296.04432 * 11 9 8 29 29 H 1.00896 * 111.00376 * 59.99771 * 11 9 8 30 30 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 31 31 H 1.07999 * 119.98480 * 179.70199 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2906 2.3750 -0.0005 5 6 1.9166 3.6057 -0.0011 6 6 3.3036 3.6789 -0.0005 7 7 3.9388 4.9258 -0.0016 8 6 4.0594 2.5142 0.0000 9 6 5.5644 2.5923 0.0012 10 1 5.8859 3.3972 0.6621 11 7 6.1204 1.3179 0.4751 12 6 6.0543 2.8648 -1.3976 13 1 5.3466 2.9713 -2.2065 14 6 7.4059 2.9793 -1.6446 15 7 8.2676 2.8501 -0.6595 16 14 8.0133 3.3179 -3.3784 17 1 9.4962 3.3959 -3.3770 18 1 7.5756 2.2213 -4.2791 19 1 7.4508 4.6061 -3.8572 20 6 3.4314 1.2838 -0.0058 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2121 2.3179 -0.0005 25 1 1.3280 4.5113 -0.0019 26 1 4.9075 4.9765 -0.0016 27 1 3.4106 5.7392 -0.0024 28 1 5.8589 1.1436 1.4340 29 1 5.8365 0.5553 -0.1214 30 1 7.9522 2.6747 0.2409 31 1 4.0192 0.3779 -0.0103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238363447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -36.468262 kcal Electronic energy + Delta-G solvation = -15120.723204 eV Core-core repulsion = 12594.081140 eV Total energy + Delta-G solvation = -2526.642065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06825 -39.07844 -36.45465 -34.63957 -33.47516 -30.99397 -29.37343 -27.57032 -27.48387 -24.69191 -22.81725 -21.62887 -19.05012 -18.50397 -18.01374 -17.57900 -16.52862 -16.33688 -15.99455 -15.70534 -15.37773 -14.76250 -14.42049 -14.19590 -13.72442 -13.54154 -13.28402 -12.84784 -12.57926 -12.35899 -12.17900 -11.91513 -11.58625 -10.87111 -10.65531 -10.46657 -9.63592 -9.31148 -8.36922 -7.93205 -6.20290 0.49109 0.80133 1.56428 1.63148 1.82512 2.55024 2.63968 2.98558 3.23373 3.35332 3.96895 4.03560 4.21879 4.36347 4.44906 4.46522 4.60311 4.71484 4.75770 5.00733 5.13774 5.31580 5.48690 5.56182 5.84824 5.97682 6.26619 6.56905 6.68795 6.77953 6.80812 7.05272 7.18129 7.69379 9.01374 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.008223 C = 0.007705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.817493 B = 3404.224478 C = 3633.279738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.345 6.345 3 C 0.056 3.944 4 C -0.169 4.169 5 C -0.167 4.167 6 C 0.176 3.824 7 N -0.869 5.869 8 C -0.137 4.137 9 C 0.254 3.746 10 H 0.014 0.986 11 N -0.837 5.837 12 C -0.603 4.603 13 H 0.029 0.971 14 C -0.008 4.008 15 N -0.918 5.918 16 Si 1.106 2.894 17 H -0.286 1.286 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.133 4.133 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.116 0.884 24 H 0.153 0.847 25 H 0.147 0.853 26 H 0.398 0.602 27 H 0.402 0.598 28 H 0.316 0.684 29 H 0.328 0.672 30 H 0.278 0.722 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 0.185 1.592 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.260 6.260 3 C 0.010 3.990 4 C -0.188 4.188 5 C -0.190 4.190 6 C 0.070 3.930 7 N -0.410 5.410 8 C -0.143 4.143 9 C 0.144 3.856 10 H 0.032 0.968 11 N -0.366 5.366 12 C -0.642 4.642 13 H 0.048 0.952 14 C -0.212 4.212 15 N -0.554 5.554 16 Si 0.931 3.069 17 H -0.212 1.212 18 H -0.209 1.209 19 H -0.200 1.200 20 C -0.152 4.152 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.134 0.866 24 H 0.171 0.829 25 H 0.164 0.836 26 H 0.227 0.773 27 H 0.231 0.769 28 H 0.127 0.873 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.276 0.520 0.584 13.299 hybrid contribution -2.153 -0.224 1.085 2.422 sum -15.429 0.296 1.668 15.522 Atomic orbital electron populations 1.23248 0.77015 1.05105 1.01908 1.86008 1.23052 1.26887 1.90041 1.18749 0.91620 0.84978 1.03635 1.21111 1.00472 0.90974 1.06245 1.20627 0.91582 0.98647 1.08191 1.17803 0.91987 0.86424 0.96740 1.42433 1.09570 1.03969 1.85054 1.20588 0.98364 0.91817 1.03568 1.17816 0.84308 0.88488 0.94998 0.96835 1.59246 1.67165 1.05343 1.04850 1.21852 0.93903 1.55125 0.93327 0.95216 1.26829 0.93752 0.93167 1.07413 1.70675 1.37897 1.43857 1.02949 0.83067 0.75478 0.77033 0.71355 1.21186 1.20867 1.19967 1.20014 0.92133 0.97238 1.05841 0.91884 0.92196 0.86610 0.82902 0.83565 0.77312 0.76853 0.87256 0.85818 0.91013 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -10.96 10.50 -93.61 -0.98 -11.94 16 3 C 0.06 1.99 6.69 22.49 0.15 2.14 16 4 C -0.17 -5.11 9.03 22.35 0.20 -4.91 16 5 C -0.17 -5.28 9.89 22.39 0.22 -5.06 16 6 C 0.18 6.74 6.73 38.15 0.26 7.00 16 7 N -0.87 -30.15 9.01 -51.26 -0.46 -30.62 16 8 C -0.14 -5.99 5.03 -19.74 -0.10 -6.09 16 9 C 0.25 12.63 1.83 43.42 0.08 12.71 16 10 H 0.01 0.74 6.96 -2.39 -0.02 0.73 16 11 N -0.84 -39.93 7.28 -174.95 -1.27 -41.20 16 12 C -0.60 -33.50 8.46 25.60 0.22 -33.29 16 13 H 0.03 1.71 7.74 -2.91 -0.02 1.69 16 14 C -0.01 -0.44 5.39 84.65 0.46 0.02 16 15 N -0.92 -55.52 13.51 21.45 0.29 -55.23 16 16 Si 1.11 51.00 29.90 68.60 2.05 53.05 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C -0.13 -5.47 9.18 22.35 0.21 -5.26 16 21 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 22 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 23 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.15 3.42 6.29 -2.91 -0.02 3.40 16 25 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 26 H 0.40 15.68 6.86 -92.71 -0.64 15.05 16 27 H 0.40 10.74 8.84 -92.71 -0.82 9.92 16 28 H 0.32 13.48 9.06 -89.69 -0.81 12.67 16 29 H 0.33 15.47 7.28 -89.70 -0.65 14.82 16 30 H 0.28 17.02 6.39 -92.70 -0.59 16.42 16 31 H 0.11 4.66 6.25 -2.91 -0.02 4.65 16 Total: -1.00 -66.80 260.73 0.88 -65.92 By element: Atomic # 1 Polarization: 52.77 SS G_CDS: -1.55 Total: 51.22 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 2.80 Total: -31.20 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -1.45 Total: -127.05 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.98 Total: -11.94 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -66.80 0.88 -65.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238363447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.452 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds