Wall clock time and date at job start Mon Mar 30 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36005 * 116.99887 * 2 1 4 4 C 1.38718 * 119.98271 * 0.02562 * 3 2 1 5 5 C 1.38093 * 120.02010 * 180.02562 * 4 3 2 6 6 C 1.38879 * 119.97860 * 359.67948 * 5 4 3 7 7 N 1.39942 * 120.02084 * 180.32063 * 6 5 4 8 8 C 1.38837 * 119.96287 * 0.55040 * 6 5 4 9 9 C 1.50700 * 120.01227 * 179.76615 * 8 6 5 10 10 H 1.09004 * 109.47210 * 324.72745 * 9 8 6 11 11 N 1.46899 * 109.47483 * 204.72414 * 9 8 6 12 12 C 1.50702 * 109.46869 * 84.72452 * 9 8 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.38136 * 119.98262 * 359.49421 * 8 6 5 21 21 H 1.09002 * 109.47437 * 300.00051 * 1 2 3 22 22 H 1.09006 * 109.46672 * 59.99943 * 1 2 3 23 23 H 1.08992 * 109.47390 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99082 * 0.02562 * 4 3 2 25 25 H 1.08001 * 120.00798 * 180.02562 * 5 4 3 26 26 H 0.96998 * 120.00202 * 180.22816 * 7 6 5 27 27 H 0.96996 * 119.99555 * 0.23303 * 7 6 5 28 28 H 1.00902 * 111.00292 * 176.04974 * 11 9 8 29 29 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 31 31 H 1.07998 * 119.99735 * 180.25020 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2905 2.3750 0.0005 5 6 1.9166 3.6058 0.0000 6 6 3.3035 3.6789 0.0057 7 7 3.9388 4.9258 0.0119 8 6 4.0593 2.5143 0.0003 9 6 5.5642 2.5924 0.0011 10 1 5.8838 3.4519 -0.5882 11 7 6.1187 1.3642 -0.5839 12 6 6.0587 2.7421 1.4168 13 1 5.3537 2.7767 2.2342 14 6 7.4115 2.8285 1.6691 15 7 8.2700 2.7858 0.6737 16 14 8.0247 3.0063 3.4245 17 1 8.2544 1.6599 4.0074 18 1 9.2974 3.7713 3.4291 19 1 7.0098 3.7289 4.2326 20 6 3.4314 1.2839 -0.0001 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 0.2120 2.3179 0.0014 25 1 1.3279 4.5113 0.0008 26 1 4.9075 4.9765 0.0125 27 1 3.4105 5.7392 0.0157 28 1 7.1238 1.4187 -0.6539 29 1 5.8365 0.5525 -0.0551 30 1 9.2217 2.8470 0.8512 31 1 4.0191 0.3778 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238363781.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:36 Heat of formation + Delta-G solvation = -15.195728 kcal Electronic energy + Delta-G solvation = -15074.595522 eV Core-core repulsion = 12548.875904 eV Total energy + Delta-G solvation = -2525.719618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49031 -37.50251 -34.46351 -33.07468 -31.57583 -29.37956 -27.85878 -26.24299 -25.90653 -23.05131 -21.24877 -19.73590 -17.20814 -16.60160 -16.41186 -16.03351 -15.21225 -14.74983 -14.62086 -13.94305 -13.31700 -13.01194 -12.72339 -12.30084 -12.18974 -12.01837 -11.50660 -11.20985 -11.05959 -10.90162 -10.71495 -10.26704 -9.99666 -9.53738 -9.21325 -8.68750 -7.95505 -7.20095 -6.43865 -6.05713 -4.26073 2.15961 2.41519 3.21849 3.29442 3.33863 3.87164 4.30993 4.65154 4.74933 5.12194 5.30441 5.40433 5.49670 5.56605 5.67670 5.97298 6.21211 6.44992 6.61619 6.72389 6.85857 7.04929 7.09888 7.48312 7.68115 7.75012 8.02744 8.10828 8.34605 8.61274 8.68705 8.96261 9.14315 9.46406 10.87361 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.008226 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.798739 B = 3402.883781 C = 3639.584870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.057 3.943 4 C -0.183 4.183 5 C -0.177 4.177 6 C 0.187 3.813 7 N -0.877 5.877 8 C -0.066 4.066 9 C 0.249 3.751 10 H 0.045 0.955 11 N -0.850 5.850 12 C -0.539 4.539 13 H 0.056 0.944 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.094 4.094 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.406 0.594 27 H 0.385 0.615 28 H 0.355 0.645 29 H 0.313 0.687 30 H 0.265 0.735 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.926 0.005 -1.028 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.239 6.239 3 C 0.012 3.988 4 C -0.202 4.202 5 C -0.201 4.201 6 C 0.083 3.917 7 N -0.418 5.418 8 C -0.071 4.071 9 C 0.139 3.861 10 H 0.063 0.937 11 N -0.381 5.381 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.114 4.114 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.237 0.763 27 H 0.211 0.789 28 H 0.171 0.829 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.058 -0.021 -1.734 11.193 hybrid contribution 0.731 0.568 2.004 2.207 sum -10.327 0.547 0.270 10.345 Atomic orbital electron populations 1.22840 0.80129 1.02655 1.00587 1.86031 1.19884 1.27729 1.90294 1.18777 0.92282 0.83432 1.04357 1.20647 0.98490 0.92047 1.09020 1.20141 0.92378 0.96861 1.10674 1.17561 0.90889 0.86414 0.96851 1.42475 1.09840 1.03707 1.85782 1.19833 0.97656 0.90027 0.99555 1.17770 0.84180 0.90991 0.93154 0.93718 1.59520 1.18218 1.04332 1.55986 1.21848 0.91782 1.50894 0.93409 0.92589 1.25023 0.96797 0.94519 0.97338 1.69747 1.02432 1.50532 1.30637 0.86527 0.78124 0.78231 0.84735 1.20631 1.21171 1.19919 1.20018 0.90134 0.98409 1.02816 0.93494 0.93469 0.89286 0.86884 0.87169 0.76267 0.78910 0.82936 0.87675 0.92481 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.70 10.50 -19.76 -0.21 -5.90 16 3 C 0.06 1.09 6.69 -39.24 -0.26 0.83 16 4 C -0.18 -3.17 9.03 -39.46 -0.36 -3.53 16 5 C -0.18 -3.14 9.89 -39.40 -0.39 -3.53 16 6 C 0.19 3.75 6.74 -83.70 -0.56 3.19 16 7 N -0.88 -15.59 9.00 32.44 0.29 -15.30 16 8 C -0.07 -1.48 5.01 -104.44 -0.52 -2.00 16 9 C 0.25 6.14 2.37 -70.02 -0.17 5.98 16 10 H 0.05 1.18 6.82 -51.93 -0.35 0.83 16 11 N -0.85 -20.51 8.79 -6.65 -0.06 -20.57 16 12 C -0.54 -14.27 8.71 -34.44 -0.30 -14.57 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.73 5.38 -17.82 -0.10 1.64 16 15 N -0.89 -24.16 11.53 55.43 0.64 -23.52 16 16 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.09 -2.02 9.20 -39.45 -0.36 -2.39 16 21 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.11 1.62 6.29 -52.49 -0.33 1.29 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.41 7.85 6.94 -40.82 -0.28 7.56 16 27 H 0.38 5.48 8.84 -40.82 -0.36 5.12 16 28 H 0.35 9.06 7.07 -39.29 -0.28 8.78 16 29 H 0.31 7.29 7.20 -39.29 -0.28 7.01 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.13 2.73 6.29 -52.49 -0.33 2.40 16 LS Contribution 260.52 15.07 3.93 3.93 Total: -1.00 -28.44 260.52 -5.86 -34.30 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -3.40 Total: 24.22 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.03 Total: -12.99 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.87 Total: -59.39 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.21 Total: -5.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.44 -5.86 -34.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238363781.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.100 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds